Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J09
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51121|GLNA_XENLA Glutamine synthetase (Glutamate--ammon... 416 e-116
sp|Q9QY94|GLNA_ACOCA Glutamine synthetase (Glutamate--ammon... 413 e-115
sp|Q04831|GLNA_PANAR Glutamine synthetase (Glutamate--ammon... 413 e-115
sp|Q8HZM5|GLNA_CANFA Glutamine synthetase (Glutamate--ammon... 413 e-115
sp|P15104|GLNA_HUMAN Glutamine synthetase (Glutamate--ammon... 412 e-115
sp|P46410|GLNA_PIG Glutamine synthetase (Glutamate--ammonia... 409 e-114
sp|P15105|GLNA_MOUSE Glutamine synthetase (Glutamate--ammon... 408 e-113
sp|P16580|GLNA_CHICK Glutamine synthetase (Glutamate--ammon... 407 e-113
sp|P09606|GLNA_RAT Glutamine synthetase (Glutamate--ammonia... 405 e-113
sp|Q4R7U3|GLNA_MACFA Glutamine synthetase (Glutamate--ammon... 404 e-112
>sp|P51121|GLNA_XENLA Glutamine synthetase (Glutamate--ammonia ligase)
Length = 392
Score = 416 bits (1068), Expect = e-116
Identities = 180/269 (66%), Positives = 228/269 (84%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+V+CE Y++ ++NLRH+C++ M+ D+ PWFG+EQEYTLL I+ +P+ WP+ GF
Sbjct: 95 KLVMCEVLKYNRKSAETNLRHTCKKIMEMVNDHRPWFGMEQEYTLLGINGHPYGWPENGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +KV+GRD++E+HYKACL+AGIKI GTNAEVMP+QWEFQ+GPCEGI++
Sbjct: 155 PGPQGPYYCGVGADKVYGRDVVESHYKACLYAGIKICGTNAEVMPSQWEFQVGPCEGIDM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLWMAR++LHRV EDFGVV + DPKP+ G+WNGAG HTNYST MR GG+K+IE+AI
Sbjct: 215 GDHLWMARFILHRVCEDFGVVATLDPKPMTGNWNGAGCHTNYSTESMRVEGGLKHIEDAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
EK+ KRH HI YDP G+DN RRLTG+HETS+I +FS+GVANRGASIRIPRQV ++G+
Sbjct: 275 EKLGKRHDYHICVYDPRGGKDNSRRLTGQHETSSIHEFSAGVANRGASIRIPRQVGQEGY 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRP++NCDPY+VTE +VRTTIL +
Sbjct: 335 GYFEDRRPAANCDPYAVTEALVRTTILNE 363
>sp|Q9QY94|GLNA_ACOCA Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 413 bits (1062), Expect = e-115
Identities = 183/269 (68%), Positives = 219/269 (81%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+V CE + Y++ P ++NLRHSC+ M + HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVFCEVFKYNRKPAETNLRHSCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AG+KI GTNAEVMPAQWEFQIGPCEGI +
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+KYIEEAI
Sbjct: 215 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
+K+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANRGASIRIPR V ++
Sbjct: 275 DKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKR 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDPY+VTE IVRT +L +
Sbjct: 335 GYFEDRRPSANCDPYAVTEAIVRTCLLNE 363
>sp|Q04831|GLNA_PANAR Glutamine synthetase (Glutamate--ammonia ligase)
Length = 361
Score = 413 bits (1061), Expect = e-115
Identities = 189/269 (70%), Positives = 220/269 (81%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+VLCETY Y++ P D+N R C E M A D HPWFG+EQEYTLLDID +P WPK G+
Sbjct: 92 KLVLCETYKYNKKPADTNQRWKCMEVMTRAADQHPWFGMEQEYTLLDIDKHPLGWPKNGY 151
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG N+V+GRD++EAHY+ACL AGI I+G NA+VMPAQWEFQ+GPCEGI +
Sbjct: 152 PGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITM 211
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
D LWMARYLLHRVAEDF VVV+ DPKPI GDWNGAG HTN+ST MR P GI IE AI
Sbjct: 212 GDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNGILEIESAI 271
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
+K+SK H +HI+AYDPH G+DN RRLTG +ETS+I DFS+GVANRGASIRIPR V+E+
Sbjct: 272 DKLSKVHEKHIKAYDPHAGKDNERRLTGHYETSSIHDFSAGVANRGASIRIPRGVAEEKT 331
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GYLEDRRPSSN DPY V+ER+VRT L +
Sbjct: 332 GYLEDRRPSSNADPYVVSERLVRTICLNE 360
>sp|Q8HZM5|GLNA_CANFA Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 413 bits (1061), Expect = e-115
Identities = 182/269 (67%), Positives = 221/269 (82%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+V CE + Y++ P ++NLRH+C+ M + HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVFCEVFKYNRKPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AGIKIAGTNAEVMPAQWEFQIGPCEGI++
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIAGTNAEVMPAQWEFQIGPCEGIDM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+KYIEE+I
Sbjct: 215 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEESI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
EK+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANRGASIRIPR V ++
Sbjct: 275 EKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRGASIRIPRTVGQEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDP+SVTE ++RT +L +
Sbjct: 335 GYFEDRRPSANCDPFSVTEALIRTCLLNE 363
>sp|P15104|GLNA_HUMAN Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 412 bits (1058), Expect = e-115
Identities = 181/269 (67%), Positives = 221/269 (82%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+VLCE + Y++ P ++NLRH+C+ M + HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVLCEVFKYNRRPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG ++ +GRDI+EAHY+ACL+AG+KIAGTNAEVMPAQWEFQIGPCEGI++
Sbjct: 155 PGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+KYIEEAI
Sbjct: 215 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
EK+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANR ASIRIPR V ++
Sbjct: 275 EKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDP+SVTE ++RT +L +
Sbjct: 335 GYFEDRRPSANCDPFSVTEALIRTCLLNE 363
>sp|P46410|GLNA_PIG Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 409 bits (1050), Expect = e-114
Identities = 180/269 (66%), Positives = 219/269 (81%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+V CE + Y++ P ++NLRH+C+ M + HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVFCEVFKYNRKPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AGIKI GTNAEVMPAQWEFQIGPCEGI++
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKIGGTNAEVMPAQWEFQIGPCEGIDM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+KYIEEAI
Sbjct: 215 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
EK+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANRGASIRIPR ++
Sbjct: 275 EKLSKRHQYHIRAYDPKGGLDNTRRLTGFHETSNINDFSAGVANRGASIRIPRTGGQEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDP++VTE ++RT +L +
Sbjct: 335 GYFEDRRPSANCDPFAVTEALIRTCLLNE 363
>sp|P15105|GLNA_MOUSE Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 408 bits (1049), Expect = e-113
Identities = 181/269 (67%), Positives = 218/269 (81%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+VLCE + Y++ P ++NLRH C+ M + HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVLCEVFKYNRKPAETNLRHICKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AG+KI GTNAEVMPAQWEFQIGPCEGI +
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKITGTNAEVMPAQWEFQIGPCEGIRM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+K+IEEAI
Sbjct: 215 GDHLWIARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKWIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
+K+SKRH HI AYDP G DN R LTG HETS I+DFS+GVANRGASIRIPR V ++
Sbjct: 275 DKLSKRHQYHIRAYDPKGGLDNARALTGFHETSNINDFSAGVANRGASIRIPRTVGQEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDPY+VTE IVRT +L +
Sbjct: 335 GYFEDRRPSANCDPYAVTEAIVRTCLLNE 363
>sp|P16580|GLNA_CHICK Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 407 bits (1047), Expect = e-113
Identities = 182/269 (67%), Positives = 217/269 (80%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+VLCE + Y++ D+NLRH+C M + HPWFG+EQEYTLL D +PF WP F
Sbjct: 95 KLVLCEVFKYNRQSADTNLRHTCRRIMDMVSNQHPWFGMEQEYTLLGTDGHPFGWPSNCF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AG+KI GTNAEVMPAQWEFQ+GPCEGI +
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+VSFDPKPI G+WNGAG HTN+ST MR GG+K+IEEAI
Sbjct: 215 GDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
EK+SKRH HI AYDP G DN RRLTG HETS+I +FS+GVANRGASIRIPR V +
Sbjct: 275 EKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEFSAGVANRGASIRIPRNVGHEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDR PS+NCDPY+VTE +VRT +L +
Sbjct: 335 GYFEDRGPSANCDPYAVTEALVRTCLLNE 363
>sp|P09606|GLNA_RAT Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 373
Score = 405 bits (1042), Expect = e-113
Identities = 181/269 (67%), Positives = 216/269 (80%)
Frame = +3
Query: 3 KMVLCETYTYDQTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLGF 182
K+V CE + Y++ P ++NLRHSC+ M HPWFG+EQEYTL+ D +PF WP GF
Sbjct: 95 KLVFCEVFKYNRKPAETNLRHSCKRIMDMVSSQHPWFGMEQEYTLMGTDGHPFGWPSNGF 154
Query: 183 PGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGINV 362
PG QGPYYCGVG +K +GRDI+EAHY+ACL+AGIKI GTNAEVMPAQWEFQIGPCEGI +
Sbjct: 155 PGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGIKITGTNAEVMPAQWEFQIGPCEGIRM 214
Query: 363 SDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEAI 542
DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G++ IEEAI
Sbjct: 215 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLRCIEEAI 274
Query: 543 EKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDGF 722
+K+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANR ASIRIPR V ++
Sbjct: 275 DKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRIVGQEKK 334
Query: 723 GYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDPY+VTE IVRT +L +
Sbjct: 335 GYFEDRRPSANCDPYAVTEAIVRTCLLNE 363
>sp|Q4R7U3|GLNA_MACFA Glutamine synthetase (Glutamate--ammonia ligase) (GS)
Length = 374
Score = 404 bits (1038), Expect = e-112
Identities = 180/270 (66%), Positives = 220/270 (81%), Gaps = 1/270 (0%)
Frame = +3
Query: 3 KMVLCETYTYD-QTPHDSNLRHSCEEAMKAAEDYHPWFGIEQEYTLLDIDLYPFSWPKLG 179
K+VLCE++ + P ++NLRH+C+ M + HPWFG+EQEYTL+ D +PF WP G
Sbjct: 95 KLVLCESFQVQFEGPAETNLRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNG 154
Query: 180 FPGAQGPYYCGVGCNKVFGRDIIEAHYKACLFAGIKIAGTNAEVMPAQWEFQIGPCEGIN 359
FPG QGPYYCGVG ++ +GRDI+EAHY+ACL+AG+KIAGTNAEVMPAQWEFQIGPCEGI+
Sbjct: 155 FPGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGIS 214
Query: 360 VSDHLWMARYLLHRVAEDFGVVVSFDPKPIAGDWNGAGAHTNYSTIQMRSPGGIKYIEEA 539
+ DHLW+AR++LHRV EDFGV+ +FDPKPI G+WNGAG HTN+ST MR G+KYIEEA
Sbjct: 215 MGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEA 274
Query: 540 IEKMSKRHHEHIEAYDPHKGEDNRRRLTGRHETSTIDDFSSGVANRGASIRIPRQVSEDG 719
IEK+SKRH HI AYDP G DN RRLTG HETS I+DFS+GVANR ASIRIPR V ++
Sbjct: 275 IEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEK 334
Query: 720 FGYLEDRRPSSNCDPYSVTERIVRTTILED 809
GY EDRRPS+NCDP+SVTE ++RT +L +
Sbjct: 335 KGYFEDRRPSANCDPFSVTEALIRTCLLNE 364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,607,600
Number of Sequences: 369166
Number of extensions: 2202917
Number of successful extensions: 6192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6029
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)