Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J08
(274 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 52 4e-07
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 39 0.004
sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (... 37 0.019
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 35 0.071
sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion)... 34 0.092
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 34 0.12
sp|Q05546|TENR_RAT Tenascin-R precursor (TN-R) (Restrictin)... 33 0.16
sp|Q8BYI9|TENR_MOUSE Tenascin-R precursor (TN-R) (Restricti... 33 0.16
sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion)... 33 0.16
sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrach... 33 0.21
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 52.0 bits (123), Expect = 4e-07
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Frame = +2
Query: 29 ECTDSGDDCSSKTGEDCTLED----VYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMD 196
ECTD +DCS C++++ ++ CPK+C+ C C D+ C + RG C K D
Sbjct: 106 ECTDLANDCSYNQNR-CSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFD 164
Query: 197 -DRV---CRKTCGHC 229
D+V C K+C C
Sbjct: 165 HDKVQKSCAKSCNIC 179
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 2 LIVVAMCEDECTDSGDDCSSKTGEDCT---LEDVYTKCPKSCHFCGDCADSRPDCDV--- 163
L V + +C DS DC++ G T + + +C ++C+ C DC D +C
Sbjct: 13 LFVSSGVAQQCMDSASDCAANAGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNCAASIN 71
Query: 164 LKERGDCDKMDDRVCRKTCGHC 229
L + + + C+KTCG C
Sbjct: 72 LCQNPTFEPLVRDRCQKTCGLC 93
>sp|Q29116|TENA_PIG Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C) (P230)
Length = 1746
Score = 36.6 bits (83), Expect = 0.019
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 62 KTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 229
+TGEDC+ +CP CH G C R +C+ + DC +M C C G C
Sbjct: 429 RTGEDCS----QLRCPNDCHGRGRCVQGRCECEHGFQGYDCSEMS---CPHDCHQHGRC 480
Score = 34.3 bits (77), Expect = 0.092
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 68 GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 193
G DC+ +CP CH G C D R +CD E DC ++
Sbjct: 369 GADCSER----RCPSDCHNRGRCLDGRCECDDGFEGEDCGEL 406
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Frame = +2
Query: 20 CEDE---CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCD 187
C +E C D C GEDC C +CH G C ++ CD DC
Sbjct: 256 CSEEHGRCVDGRCVCQEGFAGEDCN----EPLCLHNCHGRGRCVENECVCDEGFTGEDCG 311
Query: 188 KMDDRVCRKTC---GHC 229
++ +C K C G C
Sbjct: 312 EL---ICPKDCFDRGRC 325
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 101 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 220
+CP +CH G C D + C+ DC ++ C C
Sbjct: 189 ECPSNCHLRGQCVDGQCVCNEGFTGEDCSQL---ACPSDC 225
Score = 28.9 bits (63), Expect = 3.9
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 23 EDECT-DSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 193
E+EC D G TGEDC CPK C G C + CD E DC ++
Sbjct: 296 ENECVCDEGF-----TGEDCG----ELICPKDCFDRGRCINGTCYCDEGFEGEDCGRL 344
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGDC 184
TGEDC +CP C G C D R PDC L DC
Sbjct: 492 TGEDCR----ELRCPGDCSQRGRCVDGRCVCEHGFAGPDCADLACPSDC 536
Score = 28.5 bits (62), Expect = 5.1
Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Frame = +2
Query: 17 MCEDECTDSGDDCSSKT--------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKE 172
+C +C D G C + T GEDC CP C G C + + CD
Sbjct: 314 ICPKDCFDRGR-CINGTCYCDEGFEGEDCGR----LACPHGCRGRGRCEEGQCVCDEGFA 368
Query: 173 RGDCDKMDDRVCRKTC---GHC 229
DC +R C C G C
Sbjct: 369 GADC---SERRCPSDCHNRGRC 387
Score = 28.5 bits (62), Expect = 5.1
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 193
C D +C GEDC +CP C G C + + CD + DC ++
Sbjct: 387 CLDGRCECDDGFEGEDCG----ELRCPGGCSGHGRCVNGQCVCDEGRTGEDCSQL 437
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCGH 226
TG+DC +CP CH G C D + C DC + R C C +
Sbjct: 554 TGKDCGQR----RCPGDCHGQGRCVDGQCVCHEGFTGLDCGQ---RSCPNDCSN 600
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 34.7 bits (78), Expect = 0.071
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Frame = +2
Query: 101 KCPKSCHFC------GDCADSRPDCDVLKERGDC--DKMDDRVCRKTCGHC 229
+C SC C G CAD DC RG+C +K CR++C C
Sbjct: 607 QCKVSCGVCRPNYVYGPCADYHYDCAAWARRGECLKNKWMPENCRRSCNTC 657
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Frame = +2
Query: 23 EDECTDSGDDCSSKTGE-DCTLEDVYTK--CPKSCHFCG-------DCADSRPDCDVLKE 172
+ C + + C + + +C VY C SC C +C+D +C +
Sbjct: 459 QTSCFNENECCGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSR 518
Query: 173 RGDCDKMD---DRVCRKTCGHC 229
G+C+K CR +C C
Sbjct: 519 SGECNKNPLWMSENCRSSCQKC 540
>sp|P10039|TENA_CHICK Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225)
Length = 1808
Score = 34.3 bits (77), Expect = 0.092
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 229
TGEDC CP +CH G C D+ CD DC ++ +C C G C
Sbjct: 276 TGEDCN----EPLCPNNCHNRGRCVDNECVCDEGYTGEDCGEL---ICPNDCFDRGRC 326
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Frame = +2
Query: 20 CEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 178
C ++C G + + TGEDC +CP CH G C + R CD
Sbjct: 471 CPNDCNSHGRCVNGQCVCDEGYTGEDCG----ELRCPNDCHNRGRCVEGRCVCDNGFMGE 526
Query: 179 DCDKMDDRVCRKTC---GHC 229
DC ++ C C G C
Sbjct: 527 DCGELS---CPNDCHQHGRC 543
Score = 32.0 bits (71), Expect = 0.46
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Frame = +2
Query: 44 GDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGDC 184
GDDCS K +CPK C+ G C D R DC L+ DC
Sbjct: 370 GDDCSQK------------RCPKDCNNRGHCVDGRCVCHEGYLGEDCGELRCPNDC 413
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Frame = +2
Query: 20 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 178
C ++C + G + GEDC CP CH G C D R C
Sbjct: 502 CPNDCHNRGRCVEGRCVCDNGFMGEDCG----ELSCPNDCHQHGRCVDGRCVCHEGFTGE 557
Query: 179 DCDKMDDRVCRKTCGH 226
DC +R C C +
Sbjct: 558 DC---RERSCPNDCNN 570
Score = 28.1 bits (61), Expect = 6.6
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Frame = +2
Query: 14 AMCEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKE 172
A C +C D G TG DC E CP C G C R C
Sbjct: 221 AACPSDCNDQGKCVDGVCVCFEGYTGPDCGEE----LCPHGCGIHGRCVGGRCVCHEGFT 276
Query: 173 RGDCDKMDDRVCRKTC---GHC 229
DC ++ +C C G C
Sbjct: 277 GEDC---NEPLCPNNCHNRGRC 295
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Frame = +2
Query: 20 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 178
C +C + G + GEDC +CP CH G C + + CD
Sbjct: 378 CPKDCNNRGHCVDGRCVCHEGYLGEDCG----ELRCPNDCHNRGRCINGQCVCDEGFIGE 433
Query: 179 DCDKM 193
DC ++
Sbjct: 434 DCGEL 438
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCD 160
C D C TGEDC CP C+ G C + R C+
Sbjct: 543 CVDGRCVCHEGFTGEDCRERS----CPNDCNNVGRCVEGRCVCE 582
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 33.9 bits (76), Expect = 0.12
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Frame = +2
Query: 104 CPKSCHFCG--------DCADSRPDCDVLKERGDCDKM------DDRVCRKTCGHC 229
CPK+C FCG C DS +C ++ G C + C KTC C
Sbjct: 95 CPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q05546|TENR_RAT Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural
recognition molecule J1-160/180)
Length = 1356
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Frame = +2
Query: 26 DECTD--SGDDCSSK---TGEDCTLEDVYT-------KCPKSCHFCGDCADSRPDCDVLK 169
D+C++ DCSS+ +C E+ YT +CP C G CA+ C
Sbjct: 228 DDCSELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGQCANGTCLCQEGY 287
Query: 170 ERGDCDKMDDRVCRKTC---GHC 229
DC + R C C GHC
Sbjct: 288 AGEDCSQ---RRCLNACSGRGHC 307
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGD 181
C D C S+ +G+DC+ +CP C G C D DC L+ GD
Sbjct: 214 CVDGQCICDSEYSGDDCS----ELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGD 269
Query: 182 C 184
C
Sbjct: 270 C 270
>sp|Q8BYI9|TENR_MOUSE Tenascin-R precursor (TN-R) (Restrictin) (Janusin) (Neural
recognition molecule J1-160/180)
Length = 1358
Score = 33.5 bits (75), Expect = 0.16
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Frame = +2
Query: 26 DECTD--SGDDCSSK---TGEDCTLEDVYT-------KCPKSCHFCGDCADSRPDCDVLK 169
D+C++ DCSS+ +C E+ YT +CP C G CA+ C
Sbjct: 228 DDCSELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGQCANGTCLCQEGY 287
Query: 170 ERGDCDKMDDRVCRKTC---GHC 229
DC + R C C GHC
Sbjct: 288 AGEDCSQ---RRCLNACSGRGHC 307
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGD 181
C D C S+ +G+DC+ +CP C G C D DC L+ GD
Sbjct: 214 CVDGQCICDSEYSGDDCS----ELRCPTDCSSRGLCVDGECVCEEPYTGEDCRELRCPGD 269
Query: 182 C 184
C
Sbjct: 270 C 270
>sp|P24821|TENA_HUMAN Tenascin precursor (TN) (Hexabrachion) (Cytotactin) (Neuronectin)
(GMEM) (JI) (Miotendinous antigen)
(Glioma-associated-extracellular matrix antigen) (GP
150-225) (Tenascin-C) (TN-C)
Length = 2201
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 41 SGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 220
+G DCS K +CP CH G C D R +CD DC ++ C C
Sbjct: 368 AGLDCSEK------------RCPADCHNRGRCVDGRCECDDGFTGADCGELK---CPNGC 412
Query: 221 -GH 226
GH
Sbjct: 413 SGH 415
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 229
TGEDC+ +CP CH G C + + C+ + DC M C C G C
Sbjct: 430 TGEDCS----QLRCPNDCHSRGRCVEGKCVCEQGFKGYDCSDMS---CPNDCHQHGRC 480
Score = 31.2 bits (69), Expect = 0.78
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Frame = +2
Query: 17 MCEDECTDSGDDCSSK-------TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKER 175
+C ++C D G + TGEDC CP +CH G C + + CD
Sbjct: 314 ICPNDCFDRGRCINGTCYCEEGFTGEDCGKPT----CPHACHTQGRCEEGQCVCDEGFAG 369
Query: 176 GDCDKMDDRVCRKTC---GHC 229
DC ++ C C G C
Sbjct: 370 LDC---SEKRCPADCHNRGRC 387
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Frame = +2
Query: 20 CEDECTDSGDDCSSKT-------GEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERG 178
C ++C G K G DC+ CP CH G C + CD
Sbjct: 439 CPNDCHSRGRCVEGKCVCEQGFKGYDCS----DMSCPNDCHQHGRCVNGMCVCDDGYTGE 494
Query: 179 DCDKMDDRVCRKTCGH 226
DC DR C + C +
Sbjct: 495 DC---RDRQCPRDCSN 507
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKM 193
C D +C TG DC KCP C G C + + CD DC ++
Sbjct: 387 CVDGRCECDDGFTGADCG----ELKCPNGCSGHGRCVNGQCVCDEGYTGEDCSQL 437
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 101 KCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC 220
+CP +CH G C D + CD DC ++ C C
Sbjct: 189 ECPGNCHLRGRCIDGQCICDDGFTGEDCSQL---ACPSDC 225
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSR---------PDCDVLKERGDC 184
TGEDC +CP+ C G C D + PDC L DC
Sbjct: 492 TGEDCRDR----QCPRDCSNRGLCVDGQCVCEDGFTGPDCAELSCPNDC 536
>sp|P22105|TENX_HUMAN Tenascin-X precursor (TN-X) (Hexabrachion-like protein)
Length = 4289
Score = 33.1 bits (74), Expect = 0.21
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTCG 223
TGEDC + CP+ C G C D R CD DC R C CG
Sbjct: 302 TGEDCGVRS----CPRGCSQRGRCKDGRCVCDPGYTGEDC---GTRSCPWDCG 347
Score = 31.6 bits (70), Expect = 0.60
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 32 CTDSGDDC-SSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDC 184
C D C TGEDC+ CP+ C G C D CD DC
Sbjct: 352 CVDGRCVCWPGYTGEDCSTRT----CPRDCRGRGRCEDGECICDTGYSGDDC 399
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = +2
Query: 11 VAMCEDECTDSG----DDCSSKTG---EDCTLEDVYTKCPKSCHFCGDCADSRPDCD 160
V C ++C+ G C G EDC++ CP +CH G C + R CD
Sbjct: 587 VRQCPNDCSQHGVCQDGVCICWEGYVSEDCSIRT----CPSNCHGRGRCEEGRCLCD 639
Score = 29.6 bits (65), Expect = 2.3
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Frame = +2
Query: 17 MCED-----ECTDSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSR---------PD 154
+CED + SG+DCS+++ CP C G C D R D
Sbjct: 537 LCEDGVCVCDAGYSGEDCSTRS------------CPGGCRGRGQCLDGRCVCEDGYSGED 584
Query: 155 CDVLKERGDCDK---MDDRVC 208
C V + DC + D VC
Sbjct: 585 CGVRQCPNDCSQHGVCQDGVC 605
Score = 28.5 bits (62), Expect = 5.1
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Frame = +2
Query: 8 VVAMCEDECTDSGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCD 187
V +C SG DCS ++ CP+ C G C R CD DC
Sbjct: 229 VQGVCVCRAGFSGPDCSQRS------------CPRGCSQRGRCEGGRCVCDPGYTGDDCG 276
Query: 188 KMDDRVCRKTC---GHC 229
R C + C G C
Sbjct: 277 M---RSCPRGCSQRGRC 290
Score = 28.5 bits (62), Expect = 5.1
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Frame = +2
Query: 20 CED-ECTD----SGDDCSSKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDC 184
CED EC SGDDC ++ CP C+ G C D R C DC
Sbjct: 383 CEDGECICDTGYSGDDCGVRS------------CPGDCNQRGRCEDGRCVCWPGYTGTDC 430
Query: 185 DKMDDRVCRKTC---GHC 229
R C + C G C
Sbjct: 431 ---GSRACPRDCRGRGRC 445
Score = 28.1 bits (61), Expect = 6.6
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +2
Query: 32 CTDSGDDCS-SKTGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVC 208
C D C TGEDC CP C G C D R C DC R C
Sbjct: 321 CKDGRCVCDPGYTGEDCGTRS----CPWDCGEGGRCVDGRCVCWPGYTGEDC---STRTC 373
Query: 209 RKTC---GHC 229
+ C G C
Sbjct: 374 PRDCRGRGRC 383
Score = 28.1 bits (61), Expect = 6.6
Identities = 23/70 (32%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Frame = +2
Query: 32 CTDSGDDCSSK-TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVC 208
C D C+ TGEDC +CP C G C D CD DC R C
Sbjct: 507 CVDGRCVCNPGFTGEDCGSR----RCPGDCRGHGLCEDGVCVCDAGYSGEDC---STRSC 559
Query: 209 RKTC---GHC 229
C G C
Sbjct: 560 PGGCRGRGQC 569
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +2
Query: 65 TGEDCTLEDVYTKCPKSCHFCGDCADSRPDCDVLKERGDCDKMDDRVCRKTC---GHC 229
TG+DC + CP+ C G C + R C+ DC R C + C G C
Sbjct: 271 TGDDCGMRS----CPRGCSQRGRCENGRCVCNPGYTGEDCGV---RSCPRGCSQRGRC 321
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,658,603
Number of Sequences: 369166
Number of extensions: 616008
Number of successful extensions: 2374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)