Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J06
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 (MD... 144 2e-34
sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 (MD... 138 8e-33
sp|P40081|YEW4_YEAST Hypothetical 20.4 kDa protein in GLC7-... 58 1e-08
sp|Q9PPP0|SYE_UREPA Glutamyl-tRNA synthetase (Glutamate--tR... 31 1.8
sp|Q60343|Y026_METJA Hypothetical protein MJ0026 30 3.1
sp|P95493|CPG2_PORGI Gingipain R2 precursor (Gingipain 2) (... 30 3.1
sp|Q6QEJ7|PROF_APIME Profilin 30 4.0
sp|P75114|SYE_MYCPN Glutamyl-tRNA synthetase (Glutamate--tR... 29 6.9
sp|P26168|BCHE_RHOCA Anaerobic magnesium-protoporphyrin IX ... 29 9.0
sp|P47700|SYE_MYCGE Glutamyl-tRNA synthetase (Glutamate--tR... 29 9.0
>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 (MDP-1)
Length = 176
Score = 144 bits (362), Expect = 2e-34
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Frame = +3
Query: 24 LIVFDLDYTLWKFWIDTHVTPPFSKKNEIIV-DSYGSTVNFYPDSYFILKTLSSHPKIEV 200
L VFDLDYTLW FW+DTHV PPF K ++ V D G V YP+ +LK L S +
Sbjct: 7 LAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG-VPG 65
Query: 201 AVASRTTEIEGAFNLIKVSGWDQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEE 380
A ASRT+EIEGA L+++ ++ ++EIYPGSK+TH +L + +G+ F+++IFFDDE
Sbjct: 66 AAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDER 125
Query: 381 RNVKDVSKMGVHCVLVNSGVSMKLVKDHLQDILK 482
RN+ DVSK+GV C+ + +G++++ + L+ K
Sbjct: 126 RNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAK 159
>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 (MDP-1)
Length = 164
Score = 138 bits (348), Expect = 8e-33
Identities = 68/154 (44%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Frame = +3
Query: 24 LIVFDLDYTLWKFWIDTHVTPPFSKKNEIIV-DSYGSTVNFYPDSYFILKTLSSHPKIEV 200
L VFDLDYTLW FW+DTHV PPF K ++ V D G + YP+ +L L S + V
Sbjct: 7 LAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG-VPV 65
Query: 201 AVASRTTEIEGAFNLIKVSGWDQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEE 380
A ASRT+EI+GA L+++ ++ +EIYPGSK+TH +L +GV F++++FFDDE
Sbjct: 66 AAASRTSEIQGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDEN 125
Query: 381 RNVKDVSKMGVHCVLVNSGVSMKLVKDHLQDILK 482
RN+ DV ++GV C+ + G+S++ + L+ K
Sbjct: 126 RNIIDVGRLGVTCIHIRDGMSLQTLTQGLETFAK 159
>sp|P40081|YEW4_YEAST Hypothetical 20.4 kDa protein in GLC7-GDI1 intergenic region
Length = 178
Score = 58.2 bits (139), Expect = 1e-08
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Frame = +3
Query: 33 FDLDYTLWKFWIDTHVTPPF----SKKNEI--IVDSYGSTVNFYPDSYFILKTLSSHPKI 194
FDLDYT+W + DTH+ PF S E+ I+ G + Y D IL L + +
Sbjct: 10 FDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLKDN-GV 68
Query: 195 EVAVASRTTEIEGAFNLIKV-------------SGWDQFIKYKEIYPGSKMTHMAKLSRS 335
++ ASRT E A ++K+ + +D+F + G + L +
Sbjct: 69 KLMTASRTWAPEIAQEILKIFKVKYAGVVTPLANLFDEFQWGERSKIGHLRDGLKDLYNT 128
Query: 336 SGVMFNRIIFFDDEERNVKDVSKMGVHCVLV---NSGVSMKLVKDHL 467
S + +I FDDE RN K+V K GV V V +G S KL +D+L
Sbjct: 129 SDLKSKKICLFDDESRN-KEVEKYGVKFVYVRDPENGPSWKLYQDYL 174
>sp|Q9PPP0|SYE_UREPA Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 482
Score = 31.2 bits (69), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 261 WDQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEERNVKDVSKMGVH 416
WD I+ K PGS +T L + M+N + DD E + V + H
Sbjct: 165 WDDLIRGKISIPGSALTDPVILKSNKIAMYNFAVVIDDYEMQISHVIRGEEH 216
>sp|Q60343|Y026_METJA Hypothetical protein MJ0026
Length = 274
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 264 DQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEERNVKDVSKMGV-HCVLVNSGV 440
D FI PG K TH+A+L ++ G + I + ++++MGV + +++N+
Sbjct: 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA-- 141
Query: 441 SMKLVKDHL 467
M+ KD+L
Sbjct: 142 DMRKYKDYL 150
>sp|P95493|CPG2_PORGI Gingipain R2 precursor (Gingipain 2) (Arg-gingipain) (RGP-2)
Length = 736
Score = 30.4 bits (67), Expect = 3.1
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 108 IIVDSYGSTVNFYPDSYF-ILKTLSSHPKIEVAVASRTTEIEGAFNLIKVSGWDQFIKYK 284
I+ D G VNF P Y + KTL + +I VAV+ + +L+K S F ++
Sbjct: 159 ILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISLVKNS---TFTGFE 215
Query: 285 EIYPGSKMTHMA 320
+IY M + A
Sbjct: 216 DIYKSVFMNYEA 227
>sp|Q6QEJ7|PROF_APIME Profilin
Length = 126
Score = 30.0 bits (66), Expect = 4.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 333 SSGVMF--NRIIFFDDEERNVK-DVSKMGVHCVLVNSGVSMKLVKDHLQ 470
SSGV NR I+ +R ++ + K+GVHC+ V + L +D +Q
Sbjct: 58 SSGVTLAGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQ 106
>sp|P75114|SYE_MYCPN Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 484
Score = 29.3 bits (64), Expect = 6.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 261 WDQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEERNVKDVSKMGVH 416
W+ ++ K PG+ +T + L + +N + DD + + DV + H
Sbjct: 166 WNDQVRGKITIPGNSLTDIVLLKANGIATYNFAVVIDDHDMEITDVLRGAEH 217
>sp|P26168|BCHE_RHOCA Anaerobic magnesium-protoporphyrin IX monomethyl ester [oxidative]
cyclase (Anaerobic Mg-protoporphyrin IX monomethyl ester
oxidative cyclase)
Length = 575
Score = 28.9 bits (63), Expect = 9.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 54 WKFWIDTHVTPPFSKKNEIIVDSYGSTVNFYPDSYFIL 167
WKFW D V P + +VD VN Y +FIL
Sbjct: 214 WKFWRDYRVRSP-----KAVVDEIEDLVNNYDVGFFIL 246
>sp|P47700|SYE_MYCGE Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 484
Score = 28.9 bits (63), Expect = 9.0
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +3
Query: 261 WDQFIKYKEIYPGSKMTHMAKLSRSSGVMFNRIIFFDDEERNVKDVSKMGVH 416
W+ ++ + PGS +T + L + +N + DD + + DV + H
Sbjct: 166 WNDLVRGQITIPGSALTDIVILKANGVATYNFAVVIDDYDMEITDVLRGAEH 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,494,450
Number of Sequences: 369166
Number of extensions: 1019430
Number of successful extensions: 2272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2270
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)