Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J04
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UBX3|DIC_HUMAN Mitochondrial dicarboxylate carrier 264 3e-70
sp|Q9QZD8|DIC_MOUSE Mitochondrial dicarboxylate carrier 255 1e-67
sp|Q9CR62|M2OM_MOUSE Mitochondrial 2-oxoglutarate/malate ca... 165 2e-40
sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate ca... 163 7e-40
sp|P22292|M2OM_BOVIN Mitochondrial 2-oxoglutarate/malate ca... 163 7e-40
sp|P97700|M2OM_RAT Mitochondrial 2-oxoglutarate/malate carr... 160 6e-39
sp|O97562|UCP2_PIG Mitochondrial uncoupling protein 2 (UCP 2) 142 9e-34
sp|P56499|UCP3_RAT Mitochondrial uncoupling protein 3 (UCP 3) 142 9e-34
sp|P56501|UCP3_MOUSE Mitochondrial uncoupling protein 3 (UC... 142 2e-33
sp|O77792|UCP3_BOVIN Mitochondrial uncoupling protein 3 (UC... 141 3e-33
>sp|Q9UBX3|DIC_HUMAN Mitochondrial dicarboxylate carrier
Length = 287
Score = 264 bits (674), Expect = 3e-70
Identities = 135/230 (58%), Positives = 168/230 (73%), Gaps = 4/230 (1%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYK----ASKKGATPFYEKAGVSMVSGFIG 175
T GILALY+GLSASL RQ+TYS+TRF +YET + +G PF+EK + VSG G
Sbjct: 54 TDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAG 113
Query: 176 GIVGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAF 355
G VG PAD+VNVRMQND+K+ + RRNY +A+DG++RVAREEG+ LFSG +M ++R A
Sbjct: 114 GFVGTPADLVNVRMQNDVKLPQGQRRNYAHALDGLYRVAREEGLRRLFSGATMASSRGAL 173
Query: 356 MTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAKPG 535
+T GQL+ YD KQ+++ +G SDNI THF AS A G AT + QP DV+KTRLMN+K G
Sbjct: 174 VTVGQLSCYDQAKQLVLSTGYLSDNIFTHFVASFIAGGCATFLCQPLDVLKTRLMNSK-G 232
Query: 536 TYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLRMNFG 685
Y G+ C + K GPL F+KGLVPA IRL P T+LTFVFLEQLR NFG
Sbjct: 233 EYQGVFHCAVETAKLGPLAFYKGLVPAGIRLIPHTVLTFVFLEQLRKNFG 282
>sp|Q9QZD8|DIC_MOUSE Mitochondrial dicarboxylate carrier
Length = 287
Score = 255 bits (652), Expect = 1e-67
Identities = 130/230 (56%), Positives = 162/230 (70%), Gaps = 4/230 (1%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYK----ASKKGATPFYEKAGVSMVSGFIG 175
T G LALYNGLSASL RQ+TYS+TRF +YET + +G PFY K + +SG G
Sbjct: 53 TDGFLALYNGLSASLCRQMTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTG 112
Query: 176 GIVGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAF 355
G VG PAD+VNVRMQNDMK+ RRNY +A+DG++RVAREE + LFSG +M ++R A
Sbjct: 113 GFVGTPADLVNVRMQNDMKLPPSQRRNYSHALDGLYRVAREESLRKLFSGATMASSRGAL 172
Query: 356 MTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAKPG 535
+T GQL+ YD KQ+++ +G SDNI THF +S A G AT + QP DV+KTRLMN+K G
Sbjct: 173 VTVGQLSCYDQAKQLVLSTGYLSDNIFTHFVSSFIAGGCATFLCQPLDVLKTRLMNSK-G 231
Query: 536 TYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLRMNFG 685
Y G+ C + K GP FFKGL PA IRL P T+LTF+FLEQLR +FG
Sbjct: 232 EYQGVFHCAMETAKLGPQAFFKGLFPAGIRLIPHTVLTFMFLEQLRKHFG 281
>sp|Q9CR62|M2OM_MOUSE Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 165 bits (417), Expect = 2e-40
Identities = 95/230 (41%), Positives = 128/230 (55%), Gaps = 9/230 (3%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYKASKKGA--TP--FYEKAGVSMVSGFIG 175
T G+ +Y GLSA LLRQ TY+ TR G+Y GA TP F KA + M +G G
Sbjct: 74 TEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATG 133
Query: 176 GIVGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAF 355
VG PA++ +RM D ++ + RR YKN + + R+AREEGV L+ G T RA
Sbjct: 134 AFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALVRIAREEGVPTLWRGCIPTMARAVV 193
Query: 356 MTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMN---- 523
+ QLA Y KQ ++ SG FSDNI+ HF AS + + T + P D++KTR+ N
Sbjct: 194 VNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMI 253
Query: 524 -AKPGTYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQL 670
KP +GL + G +KG P + RLGP T+LTF+FLEQ+
Sbjct: 254 DGKPEYKNGLDVLLKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQM 303
Score = 33.9 bits (76), Expect = 0.60
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +2
Query: 158 VSGFIGGIVG-------NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVL 316
V GG+ G P D+V RMQ + AK R YK + + + + EG+ +
Sbjct: 23 VKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKT--REYKTSFHALTSILKTEGLKGI 80
Query: 317 FSGVSMTATRAAFMTFGQLAFYD-LFKQM 400
++G+S R A T +L Y LF+++
Sbjct: 81 YTGLSAGLLRQATYTTTRLGIYTVLFERL 109
>sp|Q02978|M2OM_HUMAN Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 163 bits (412), Expect = 7e-40
Identities = 93/228 (40%), Positives = 126/228 (55%), Gaps = 9/228 (3%)
Frame = +2
Query: 14 GILALYNGLSASLLRQLTYSMTRFGLYETYKASKKGA--TP--FYEKAGVSMVSGFIGGI 181
G+ +Y GLSA LLRQ TY+ TR G+Y GA TP F KA + M +G G
Sbjct: 76 GLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAF 135
Query: 182 VGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMT 361
VG PA++ +RM D ++ + RR YKN + + R+ REEGV+ L+ G T RA +
Sbjct: 136 VGTPAEVALIRMTADGRLPADQRRGYKNVFNALIRITREEGVLTLWRGCIPTMARAVVVN 195
Query: 362 FGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMN-----A 526
QLA Y KQ ++ SG FSDNI+ HF AS + + T + P D+ KTR+ N
Sbjct: 196 AAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIAKTRIQNMRMIDG 255
Query: 527 KPGTYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQL 670
KP +GL + G +KG P + RLGP T+LTF+FLEQ+
Sbjct: 256 KPEYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQM 303
Score = 33.5 bits (75), Expect = 0.79
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +2
Query: 158 VSGFIGGIVG-------NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVL 316
V GG+ G P D+V RMQ + AK R YK + + + + EG+ +
Sbjct: 23 VKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKT--REYKTSFHALTSILKAEGLRGI 80
Query: 317 FSGVSMTATRAAFMTFGQLAFYD-LFKQM 400
++G+S R A T +L Y LF+++
Sbjct: 81 YTGLSAGLLRQATYTTTRLGIYTVLFERL 109
>sp|P22292|M2OM_BOVIN Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)
Length = 314
Score = 163 bits (412), Expect = 7e-40
Identities = 93/228 (40%), Positives = 127/228 (55%), Gaps = 9/228 (3%)
Frame = +2
Query: 14 GILALYNGLSASLLRQLTYSMTRFGLYETYKASKKGA--TP--FYEKAGVSMVSGFIGGI 181
G+ +Y GLSA LLRQ TY+ TR G+Y GA TP F KA + M +G G
Sbjct: 76 GLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAF 135
Query: 182 VGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMT 361
VG PA++ +RM D ++ + RR YKN + +FR+ +EEGV L+ G T RA +
Sbjct: 136 VGTPAEVALIRMTADGRLPVDQRRGYKNVFNALFRIVQEEGVPTLWRGCIPTMARAVVVN 195
Query: 362 FGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMN-----A 526
QLA Y KQ ++ SG FSDNI+ HF AS + + T + P D++KTR+ N
Sbjct: 196 AAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASMPVDIVKTRIQNMRMIDG 255
Query: 527 KPGTYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQL 670
KP +GL + G +KG P + RLGP T+LTF+FLEQ+
Sbjct: 256 KPEYKNGLDVLVKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQM 303
Score = 35.4 bits (80), Expect = 0.21
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +2
Query: 158 VSGFIGGIVG-------NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVL 316
V GG+ G P D+V RMQ + AK R YK + + + R EG+ +
Sbjct: 23 VKFLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKT--REYKTSFHALISILRAEGLRGI 80
Query: 317 FSGVSMTATRAAFMTFGQLAFYD-LFKQM 400
++G+S R A T +L Y LF+++
Sbjct: 81 YTGLSAGLLRQATYTTTRLGIYTVLFERL 109
>sp|P97700|M2OM_RAT Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute
carrier family 25 member 11)
Length = 314
Score = 160 bits (404), Expect = 6e-39
Identities = 93/228 (40%), Positives = 126/228 (55%), Gaps = 9/228 (3%)
Frame = +2
Query: 14 GILALYNGLSASLLRQLTYSMTRFGLYETYKASKKGA--TP--FYEKAGVSMVSGFIGGI 181
G+ +Y GLSA LLRQ TY+ TR G+Y GA TP F KA + M +G G
Sbjct: 76 GLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAF 135
Query: 182 VGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMT 361
VG PA++ +RM D ++ + RR YKN + + R+AREEGV L+ G T RA +
Sbjct: 136 VGPPAEVALIRMTADGRLPADQRRGYKNVFNALIRIAREEGVPTLWRGCIPTMARAVVVN 195
Query: 362 FGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMN-----A 526
QLA Y KQ ++ SG FSDNI+ HF A + + T + P D++KTR+ N
Sbjct: 196 AAQLASYSQSKQFLLDSGYFSDNILCHFCAIMISGLVTTAASMPVDIVKTRIQNMRMIDE 255
Query: 527 KPGTYSGLLECGADIMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQL 670
KP +GL + G +KG P + RLGP T+LTF+FLEQ+
Sbjct: 256 KPEYKNGLDVLLKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQM 303
Score = 33.1 bits (74), Expect = 1.0
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Frame = +2
Query: 158 VSGFIGGIVG-------NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVL 316
V GG+ G P D+V RMQ + AK R YK + + + + EG+ +
Sbjct: 23 VKFLFGGLAGMGATVFVQPLDLVXNRMQLSGEGAKT--REYKTSFHALTSILKAEGLRGI 80
Query: 317 FSGVSMTATRAAFMTFGQLAFYD-LFKQM 400
++G+S R A T +L Y LF+++
Sbjct: 81 YTGLSAGLLRQATYTTTRLGIYTVLFERL 109
>sp|O97562|UCP2_PIG Mitochondrial uncoupling protein 2 (UCP 2)
Length = 309
Score = 142 bits (359), Expect = 9e-34
Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 8/228 (3%)
Frame = +2
Query: 14 GILALYNGLSASLLRQLTYSMTRFGLYETYKAS-KKGATPFYEKAGVSM------VSGFI 172
G +LYNGL A L RQ++++ R GLY++ K KG+ E AG+ +G +
Sbjct: 74 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVKHFYTKGS----EHAGIGSRLLAGSTTGAL 129
Query: 173 GGIVGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAA 352
V P D+V VR Q + R Y++ VD +AREEG+ L+ G S R A
Sbjct: 130 AVAVAQPTDVVKVRFQAQARAGGG--RRYRSTVDAYKTIAREEGLRGLWKGTSPNVARNA 187
Query: 353 FMTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAKP 532
+ +L YDL K ++++ L +D++ HFT++ GA T++ P DV+KTR MN+ P
Sbjct: 188 IVNCAELVTYDLIKDTLLKADLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAP 247
Query: 533 GTYSGLLECGADIM-KTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLR 673
G YS C ++ K GP F+KG P+F+RLG ++ FV EQL+
Sbjct: 248 GQYSSAGHCALTMLQKEGPRAFYKGFTPSFLRLGSWNVVMFVTYEQLK 295
>sp|P56499|UCP3_RAT Mitochondrial uncoupling protein 3 (UCP 3)
Length = 308
Score = 142 bits (359), Expect = 9e-34
Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 5/227 (2%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYKASKKGATPFYEKAGVSMVSGFIGGIVG 187
T G + Y+GL A L RQ++++ R GLY++ K + + +++G G +
Sbjct: 68 TEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKGTDHSSVAIRILAGCTTGAMA 127
Query: 188 ----NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAF 355
P D+V VR Q +++ R Y+ +D +AREEGV L+ G TR A
Sbjct: 128 VTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAI 187
Query: 356 MTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAKPG 535
+ ++ YD+ K+ ++ S LF+DN HF ++ GA AT++ P DV+KTR MNA PG
Sbjct: 188 VNCAEMVTYDIIKEKLLDSHLFTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNAPPG 247
Query: 536 TYSGLLECGAD-IMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLR 673
Y L C + + GP F+KG +P+F+RLG ++ FV EQL+
Sbjct: 248 RYRSPLHCMLRMVAQEGPTAFYKGFMPSFLRLGSWNVMMFVTYEQLK 294
Score = 37.4 bits (85), Expect = 0.054
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Frame = +2
Query: 191 PADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMTFGQ 370
P D VR+Q + Y+ + + + R EG +SG+ R +
Sbjct: 33 PLDTAKVRLQIQGENPGVQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIR 92
Query: 371 LAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLM-NAKPGT--- 538
+ YD KQ G ++ A +A QP DV+K R + GT
Sbjct: 93 IGLYDSVKQFYTPKGTDHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGE 152
Query: 539 --YSGLLECGADIMK-TGPLGFFKGLVPAFIR 625
Y G ++ I + G G +KG P R
Sbjct: 153 RKYRGTMDAYRTIAREEGVRGLWKGTWPNITR 184
>sp|P56501|UCP3_MOUSE Mitochondrial uncoupling protein 3 (UCP 3)
Length = 308
Score = 142 bits (357), Expect = 2e-33
Identities = 82/229 (35%), Positives = 127/229 (55%), Gaps = 7/229 (3%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYKA--SKKGATPFYEKAGVSMVSGFIGGI 181
T G + Y+GL A L RQ++++ R GLY++ K + KGA + + +++G G
Sbjct: 68 TEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKGAD--HSSVAIRILAGCTTGA 125
Query: 182 VG----NPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRA 349
+ P D+V VR Q +++ R Y+ +D +AREEGV L+ G TR
Sbjct: 126 MAVTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRN 185
Query: 350 AFMTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAK 529
A + ++ YD+ K+ +++S LF+DN HF ++ GA AT++ P DV+KTR MNA
Sbjct: 186 AIVNCAEMVTYDIIKEKLLESHLFTDNFPCHFVSAFGAGFCATVVASPVDVVKTRYMNAP 245
Query: 530 PGTYSGLLECGAD-IMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLR 673
G Y L C + + GP F+KG VP+F+RLG ++ FV EQL+
Sbjct: 246 LGRYRSPLHCMLKMVAQEGPTAFYKGFVPSFLRLGAWNVMMFVTYEQLK 294
Score = 37.7 bits (86), Expect = 0.042
Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Frame = +2
Query: 191 PADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMTFGQ 370
P D VR+Q + Y+ + + + R EG +SG+ R +
Sbjct: 33 PLDTAKVRLQIQGENPGAQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIR 92
Query: 371 LAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLM-NAKPGT--- 538
+ YD KQ G ++ A +A QP DV+K R + GT
Sbjct: 93 IGLYDSVKQFYTPKGADHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGE 152
Query: 539 --YSGLLECGADIMK-TGPLGFFKGLVPAFIR 625
Y G ++ I + G G +KG P R
Sbjct: 153 RKYRGTMDAYRTIAREEGVRGLWKGTWPNITR 184
>sp|O77792|UCP3_BOVIN Mitochondrial uncoupling protein 3 (UCP 3)
Length = 311
Score = 141 bits (355), Expect = 3e-33
Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 5/227 (2%)
Frame = +2
Query: 8 TRGILALYNGLSASLLRQLTYSMTRFGLYETYKA--SKKGA--TPFYEKAGVSMVSGFIG 175
T G +LY+GL A L RQ++++ R GLY++ K + KG+ + + +G +
Sbjct: 71 TEGPRSLYSGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSSIITRILAGCTTGAMA 130
Query: 176 GIVGNPADMVNVRMQNDMKVAKELRRNYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAF 355
P D+V +R Q M R Y +D +AREEGV L+ G+ TR A
Sbjct: 131 VTCAQPTDVVKIRFQASMHTGLGGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAI 190
Query: 356 MTFGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRLMNAKPG 535
+ G++ YD+ K+ ++ L +DN HF ++ GA ATL+ P DV+KTR MN+ PG
Sbjct: 191 VNCGEMVTYDIIKEKLLDYHLLTDNFPCHFVSAFGAGFCATLVASPVDVVKTRYMNSPPG 250
Query: 536 TYSGLLECGAD-IMKTGPLGFFKGLVPAFIRLGPQTILTFVFLEQLR 673
Y +C + + GP F+KG P+F+RLG ++ FV EQ++
Sbjct: 251 QYHSPFDCMLKMVTQEGPTAFYKGFTPSFLRLGSWNVVMFVTYEQMK 297
Score = 48.1 bits (113), Expect = 3e-05
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
Frame = +2
Query: 191 PADMVNVRMQ--NDMKVAKELRR-NYKNAVDGMFRVAREEGVVVLFSGVSMTATRAAFMT 361
P D VR+Q + + A R Y+ + + + R EG L+SG+ R
Sbjct: 33 PLDTAKVRLQIQGENQAALAARSAQYRGVLGTILTMVRTEGPRSLYSGLVAGLQRQMSFA 92
Query: 362 FGQLAFYDLFKQMMIQSGLFSDNIITHFTASTGAAGIATLMTQPFDVMKTRL---MNAKP 532
++ YD KQ G +IIT A +A QP DV+K R M+
Sbjct: 93 SIRIGLYDSVKQFYTPKGSDHSSIITRILAGCTTGAMAVTCAQPTDVVKIRFQASMHTGL 152
Query: 533 G---TYSGLLECGADIMK-TGPLGFFKGLVPAFIR 625
G YSG ++ I + G G +KG++P R
Sbjct: 153 GGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITR 187
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,854,966
Number of Sequences: 369166
Number of extensions: 1942414
Number of successful extensions: 5409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5184
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)