Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_I20
(866 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97329|KI20A_MOUSE Kinesin family member 20A (Rabkinesin... 37 0.092
sp|O95235|KI20A_HUMAN Kinesin family member 20A (Rabkinesin... 36 0.12
sp|P27805|FLAB3_METVO Flagellin B3 precursor 35 0.35
sp|P23116|IF3A_MOUSE Eukaryotic translation initiation fact... 32 2.3
sp|Q14152|IF3A_HUMAN Eukaryotic translation initiation fact... 31 5.1
sp|Q8P993|FTSK_XANCP DNA translocase ftsK 30 6.6
sp|P37709|TRHY_RABIT Trichohyalin 30 6.6
sp|Q8PL00|FTSK_XANAC DNA translocase ftsK 30 6.6
sp|Q8CTE6|LGT_STAES Prolipoprotein diacylglyceryl transferase 30 6.6
sp|Q9H501|CT006_HUMAN Hypothetical protein C20orf6 30 8.7
>sp|P97329|KI20A_MOUSE Kinesin family member 20A (Rabkinesin-6) (Rab6-interacting
kinesin-like protein) (Kinesin-like protein 174)
Length = 887
Score = 36.6 bits (83), Expect = 0.092
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 17 KRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYLAIDQDS 196
+R ++ +Q + K +LE + + HK +LK PP AKP + +D+
Sbjct: 673 RRSQRLAASASTQQFQEVKAELEQCKTELSSTTAELHKYQQVLKPPPPAKPFTIDVDKKL 732
Query: 197 EDKRFQFPLLTT 232
E+ + LL T
Sbjct: 733 EEGQKNIRLLRT 744
>sp|O95235|KI20A_HUMAN Kinesin family member 20A (Rabkinesin-6) (Rab6-interacting
kinesin-like protein) (GG10_2)
Length = 890
Score = 36.2 bits (82), Expect = 0.12
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 17 KRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYLAIDQDS 196
+R ++ +QL+ K KL+ + HK +L+ PP AKP + +D+
Sbjct: 675 RRSQRLAASASTQQLQEVKAKLQQCKAELNSTTEELHKYQKMLEPPPSAKPFTIDVDKKL 734
Query: 197 EDKRFQFPLLTT 232
E+ + LL T
Sbjct: 735 EEGQKNIRLLRT 746
>sp|P27805|FLAB3_METVO Flagellin B3 precursor
Length = 239
Score = 34.7 bits (78), Expect = 0.35
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +2
Query: 110 RNSRAHKTSDILKVP--------PFAKPHYLAIDQDSEDKRFQFPLLTTNDDEKTMKTFN 265
R S A+ TSDI K PF P Y DQD +K+F +L D+ + +
Sbjct: 123 RLSTANGTSDIFKYDDVYAIGAWPFEDPTYGQSDQDPNEKKFGIVVLQDMDNSVSGEHPT 182
Query: 266 VQLSNFNDKLLEQINI 313
V N+ DK+L INI
Sbjct: 183 V---NYGDKVLLAINI 195
>sp|P23116|IF3A_MOUSE Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162
protein) (Centrosomin)
Length = 1344
Score = 32.0 bits (71), Expect = 2.3
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +2
Query: 11 RQKRDSQIREWQE----VKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYL 178
R KR+ ++RE+QE ++++ER+K + E ++ +RR + D P ++
Sbjct: 834 RAKREEELREYQERVKKLEEVERKKRQRELEIEERERRREEERRLGD----DPLSRKDSR 889
Query: 179 AIDQDSE 199
D+DSE
Sbjct: 890 WGDRDSE 896
>sp|Q14152|IF3A_HUMAN Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta)
(eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
Length = 1382
Score = 30.8 bits (68), Expect = 5.1
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +2
Query: 11 RQKRDSQIREWQE----VKQLEREKVKLEHQVRSMQRRNSRAHKTSD 139
R KR+ ++RE+QE ++++ER+K + E ++ +RR + D
Sbjct: 834 RAKREEELREYQERVKKLEEVERKKRQRELEIEERERRREEERRLGD 880
>sp|Q8P993|FTSK_XANCP DNA translocase ftsK
Length = 785
Score = 30.4 bits (67), Expect = 6.6
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 11 RQKRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYLAIDQ 190
R++R+ ++R+ VKQ +RE VK+E + ++ RA + + I P + +
Sbjct: 231 REERE-EVRKVDAVKQAKREPVKIEPPPAPVVEKSERAKRDTQI--------PMFQGVST 281
Query: 191 DSEDKRFQFPLLTTNDDEKTMKTFNVQLSNFNDKLLEQIN 310
D D P L DD K Q ++++ LE ++
Sbjct: 282 DGSD----LPPLALLDDPKP------QAKGYSEETLETLS 311
>sp|P37709|TRHY_RABIT Trichohyalin
Length = 1407
Score = 30.4 bits (67), Expect = 6.6
Identities = 23/98 (23%), Positives = 46/98 (46%)
Frame = +2
Query: 11 RQKRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYLAIDQ 190
RQ+RD ++RE +++ Q E E+ +L Q R Q R R K + ++ + L +
Sbjct: 735 RQERDRKLREEEQLLQ-ESEEERLRRQEREQQLRRERDRKFREEEQLLQEREEERLRRQE 793
Query: 191 DSEDKRFQFPLLTTNDDEKTMKTFNVQLSNFNDKLLEQ 304
R + LL ++E+ + + ++LL++
Sbjct: 794 RERKLREEEQLLQEREEERLRRQERERKLREEEQLLQE 831
>sp|Q8PL00|FTSK_XANAC DNA translocase ftsK
Length = 785
Score = 30.4 bits (67), Expect = 6.6
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 11 RQKRDSQIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDILKVPPFAKPHYLAIDQ 190
R++R+ ++R+ VKQ +RE VK+E + ++ RA + + I P + +
Sbjct: 231 REERE-EVRKVDAVKQAKREPVKIEPPPAPVVEKSERAKRDTQI--------PMFQGVST 281
Query: 191 DSEDKRFQFPLLTTNDDEKTMKTFNVQLSNFNDKLLEQIN 310
D D P L DD K Q ++++ LE ++
Sbjct: 282 DGSD----LPPLALLDDPKP------QTKGYSEETLETLS 311
>sp|Q8CTE6|LGT_STAES Prolipoprotein diacylglyceryl transferase
Length = 279
Score = 30.4 bits (67), Expect = 6.6
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -2
Query: 865 LSVVVIIATIMFSIDRRIKYSLYKYE 788
+SVV+I+ +++F I RR+KY KYE
Sbjct: 241 VSVVLILISVIFVIYRRVKYQPIKYE 266
>sp|Q9H501|CT006_HUMAN Hypothetical protein C20orf6
Length = 851
Score = 30.0 bits (66), Expect = 8.7
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Frame = +2
Query: 29 QIREWQEVKQLEREKVKLEHQVRSMQRRNSRAHKTSDI-LKVPPFAKP-HYLAIDQDS-- 196
++ W++ + ++EK +L+ + +++ S SD+ L P FA+ + I++ S
Sbjct: 628 KLTPWEQFLEKKKEKKRLKRKQKALAEEASEEELPSDVDLNDPYFAEEVKQIGINKKSVK 687
Query: 197 --------------EDKRFQFPLLTTNDDEKTMKTFNVQLSNFNDKLLEQINIVKNNK 328
E ++ + LL ++DE + K FN +K++E N+ K K
Sbjct: 688 SAKDGTSPEEEIEIERQKAEMALLMMDEDEDSKKHFNY------NKIVEHQNLSKKKK 739
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,223,553
Number of Sequences: 369166
Number of extensions: 1763076
Number of successful extensions: 5487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5481
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)