Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_I16
(733 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30535|BZRP_BOVIN Peripheral-type benzodiazepine recepto... 114 2e-25
sp|P16257|BZRP_RAT Peripheral-type benzodiazepine receptor ... 114 3e-25
sp|P50637|BZRP_MOUSE Peripheral-type benzodiazepine recepto... 110 3e-24
sp|P30536|BZRP_HUMAN Peripheral-type benzodiazepine recepto... 109 7e-24
sp|P17057|CRTK_RHOCA Protein crtK 76 8e-14
sp|P14692|KAF8_SORBI Kafirin PSK8 precursor 31 3.0
sp|P14690|KAF1_SORBI Kafirin PGK1 precursor 31 3.9
>sp|P30535|BZRP_BOVIN Peripheral-type benzodiazepine receptor (PBR) (PKBS)
(Isoquinoline-binding protein) (IBP)
Length = 169
Score = 114 bits (286), Expect = 2e-25
Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Frame = +2
Query: 50 IPFIANVPSSIITRNEVKTWYRTIRKPSFTPPKYVFGPVWSVLYATMGYSSYLIWKE-GG 226
+P + + TR E WY +++KP + PP+++ P+W LY+ MGY SY+IWKE GG
Sbjct: 14 LPSLGGFLGAQYTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYMIWKELGG 73
Query: 227 FTRETKLPLILYGSQLLLNSAWSLIFFGRHKIGWAAVDISLLYINVLACVITFRSVNKTA 406
F++E +PL LY QL LN AW +FFG ++GWA VD+ L A + + V+ A
Sbjct: 74 FSKEAVVPLGLYAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMAWHQVSPPA 133
Query: 407 SNXXXXXXXXXXXAGAVNLKTWQLNK 484
+ AG +N + WQ N+
Sbjct: 134 ACLLYPYLAWLAFAGMLNYRMWQDNQ 159
>sp|P16257|BZRP_RAT Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial
benzodiazepine receptor)
Length = 169
Score = 114 bits (284), Expect = 3e-25
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Frame = +2
Query: 50 IPFIANVPSSIITRNEVKTWYRTIRKPSFTPPKYVFGPVWSVLYATMGYSSYLIWKE-GG 226
+P + + R E WY +++KPS+ PP++ P+W LY+ MGY SY+IWKE GG
Sbjct: 14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGG 73
Query: 227 FTRETKLPLILYGSQLLLNSAWSLIFFGRHKIGWAAVDISLLYINVLACVITFRSVNKTA 406
FT E +PL LY QL LN AW IFFG ++GWA VD+ L+ A + + V+ A
Sbjct: 74 FTEEAMVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPA 133
Query: 407 SNXXXXXXXXXXXAGAVNLKTWQLNKNNPSAS 502
+ A +N W+ N S
Sbjct: 134 ARLLYPYLAWLAFATMLNYYVWRDNSGRRGGS 165
>sp|P50637|BZRP_MOUSE Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial
benzodiazepine receptor)
Length = 169
Score = 110 bits (276), Expect = 3e-24
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Frame = +2
Query: 50 IPFIANVPSSIITRNEVKTWYRTIRKPSFTPPKYVFGPVWSVLYATMGYSSYLIWKE-GG 226
+P + + R E WY +++KPS+ PP++ P+W LY+ MGY SY++WKE GG
Sbjct: 14 VPSLGGFMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGG 73
Query: 227 FTRETKLPLILYGSQLLLNSAWSLIFFGRHKIGWAAVDISLLYINVLACVITFRSVNKTA 406
FT + +PL LY QL LN AW IFFG ++GWA D+ L+ A + + V+ A
Sbjct: 74 FTEDAMVPLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPA 133
Query: 407 SNXXXXXXXXXXXAGAVNLKTWQLNKNNPSAS 502
+ A +N W+ N S
Sbjct: 134 ARLLYPYLAWLAFATVLNYYVWRDNSGRRGGS 165
>sp|P30536|BZRP_HUMAN Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial
benzodiazepine receptor)
Length = 169
Score = 109 bits (273), Expect = 7e-24
Identities = 57/144 (39%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Frame = +2
Query: 53 PFIANVPSSIITRNEVKTWYRTIRKPSFTPPKYVFGPVWSVLYATMGYSSYLIWKE-GGF 229
P + S E WY ++KPS+ PP +V GPVW LY+ MGY SYL+WKE GGF
Sbjct: 15 PSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAMGYGSYLVWKELGGF 74
Query: 230 TRETKLPLILYGSQLLLNSAWSLIFFGRHKIGWAAVDISLLYINVLACVITFRSVNKTAS 409
T + +PL LY QL LN AW IFFG ++GWA VD+ L+ A + + V+ A+
Sbjct: 75 TEKAVVPLGLYTGQLALNWAWPPIFFGARQMGWALVDLLLVSGAAAATTVAWYQVSPLAA 134
Query: 410 NXXXXXXXXXXXAGAVNLKTWQLN 481
A +N W+ N
Sbjct: 135 RLLYPYLAWLAFATTLNYCVWRDN 158
>sp|P17057|CRTK_RHOCA Protein crtK
Length = 160
Score = 76.3 bits (186), Expect = 8e-14
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Frame = +2
Query: 107 WYRTIRKPSFTPPKYVFGPVWSVLYATMGYSSYLIWKEGGFTRETKLP---LILYGSQLL 277
WY +++KPS+ PP ++F WS LY M S+ + G E +L L + Q+
Sbjct: 28 WYDSLKKPSWVPPNWLFPVAWSTLYILMSISAARV---SGLAMENELAVLGLAFWAVQIA 84
Query: 278 LNSAWSLIFFGRHKIGWAAVDISLLYINVLACVITFRSVNKTASNXXXXXXXXXXXAGAV 457
+N+ W+ IFFG H++ + + LL+++V A + F SV+ + AGA+
Sbjct: 85 VNTLWTPIFFGLHRLAGGMLVLVLLWLSVFATCVLFWSVDWLSGLMFVPYVIWVTVAGAL 144
Query: 458 NLKTWQLN 481
N W+LN
Sbjct: 145 NFSVWRLN 152
>sp|P14692|KAF8_SORBI Kafirin PSK8 precursor
Length = 267
Score = 31.2 bits (69), Expect = 3.0
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -1
Query: 451 TRQREPSQIRQQQVGRCFIHRSECDHASQHIYVEQRNINSSPTNFVSAKKYQRPS*IQKQ 272
TR+R+ Q +QQQ + S +Q Y++Q+ + S+P + +A YQ+ +Q
Sbjct: 85 TRRRQQQQQQQQQQQQFLSSLSALAVRNQAAYLQQQLLTSNPHSLANAAAYQQQQQLQLA 144
Query: 271 L----RAVQNQW*LSFP 233
+ VQ Q LS P
Sbjct: 145 MANPTAYVQQQLLLSNP 161
>sp|P14690|KAF1_SORBI Kafirin PGK1 precursor
Length = 269
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -1
Query: 451 TRQREPSQIRQQQVGRCFIHRSECDHASQHIYVEQRNINSSPTNFVSAKKYQRPS*IQKQ 272
T Q++ Q +QQQ + S A+Q Y++Q+ + S+P + +A YQ+ +Q
Sbjct: 87 TAQQQQQQQQQQQQQQFLSSLSALAVANQAAYLQQQLLTSNPHSLANAAAYQQQQQLQLA 146
Query: 271 L----RAVQNQW*LSFP 233
+ VQ Q LS P
Sbjct: 147 MANPTAYVQQQLLLSNP 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,071,568
Number of Sequences: 369166
Number of extensions: 1594726
Number of successful extensions: 3336
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3329
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)