Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H09
(512 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BW30|CG38_HUMAN Protein CGI-38 79 5e-15
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 77 2e-14
sp|P59282|P25B_HUMAN Protein p25-beta 74 2e-13
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 74 3e-13
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 72 6e-13
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 71 2e-12
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 65 9e-11
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 64 2e-10
sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase... 33 0.52
sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF... 32 1.2
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 79.3 bits (194), Expect = 5e-15
Identities = 48/124 (38%), Positives = 66/124 (53%)
Frame = +3
Query: 3 IQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGT 182
I F K G + + ++Y +F + +E + + DA+ +L + PA G
Sbjct: 57 IVFSKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQL---VAGKEPANVGV 113
Query: 183 TGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 362
T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AGT
Sbjct: 114 TKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAGT 169
Query: 363 YDKK 374
YD K
Sbjct: 170 YDAK 173
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 77.4 bits (189), Expect = 2e-14
Identities = 48/124 (38%), Positives = 65/124 (52%)
Frame = +3
Query: 3 IQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGT 182
I F K + + ++Y +F + +E + + DA+ +L I PA G
Sbjct: 57 IVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQL---IAGKEPANIGV 113
Query: 183 TGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 362
T A RLTD YTG+HKERFD E+GKGKGI GR+ + ++ GYV YK AGT
Sbjct: 114 TKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGIAGRQDILDDS---GYVSAYKNAGT 169
Query: 363 YDKK 374
YD K
Sbjct: 170 YDAK 173
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/70 (57%), Positives = 44/70 (62%)
Frame = +3
Query: 165 PAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGG 344
PA G T + A RLTD YTG HKE FD E+GKGKGI GRE + GYV G
Sbjct: 103 PATTGATKATTVGAVDRLTDTSKYTGTHKELFD-ESGKGKGIAGREEMTDNT---GYVSG 158
Query: 345 YKGAGTYDKK 374
YKG+GTYDKK
Sbjct: 159 YKGSGTYDKK 168
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 73.6 bits (179), Expect = 3e-13
Identities = 47/124 (37%), Positives = 69/124 (55%)
Frame = +3
Query: 3 IQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGT 182
I F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 97 IVFSKIKGKSCRTITFEQFQEALEELAKKRF---KDKSSEEAVREVHRLIEGRAPVISGV 153
Query: 183 TGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 362
T + +RLTD +TG+HKERFD ++GKGKG GR L E+ GYV GYK AGT
Sbjct: 154 TKAVSSPTVSRLTDTSKFTGSHKERFD-QSGKGKGKAGRVDLVDES---GYVPGYKHAGT 209
Query: 363 YDKK 374
YD+K
Sbjct: 210 YDQK 213
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 72.4 bits (176), Expect = 6e-13
Identities = 47/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 3 IQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGT 182
I F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 98 IVFSKIKGKSCRTITFEQFQEALEELAKKRF---KDKSSEEAVREVHRLIEGKAPIISGV 154
Query: 183 TGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 362
T + +RLTD +TG+HKERFD +GKGKG GR L E+ GYV GYK AGT
Sbjct: 155 TKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGKAGRVDLVDES---GYVSGYKHAGT 210
Query: 363 YDKK 374
YD+K
Sbjct: 211 YDQK 214
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 70.9 bits (172), Expect = 2e-12
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 3 IQFRKHIGNAKKDVDYNDFVRFVEGPMAEAYMSARNLAYEDAVQELKTKICQGSPAGHGT 182
I F K G + + + + F +E + + ++ + E+AV+E+ I +P G
Sbjct: 97 IVFSKIKGKSCRTITFEQFKEALEELAKKRF---KDKSAEEAVREVHKLIEGKAPIISGV 153
Query: 183 TGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREYLAGENAQQGYVGGYKGAGT 362
T + +RLTD +TG+HKERFD +G+GKG GR L E+ GYV GYK AGT
Sbjct: 154 TKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGRAGRVDLVDES---GYVPGYKHAGT 209
Query: 363 YDKK 374
YD+K
Sbjct: 210 YDQK 213
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 65.1 bits (157), Expect = 9e-11
Identities = 40/83 (48%), Positives = 47/83 (56%)
Frame = +3
Query: 123 DAVQELKTKICQGSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGRE 302
DA+ E K+ +P+ G +A +RLTD YTGAHKERFDAE GKGKG GR
Sbjct: 100 DAITEKLAKL--EAPSVGGAAKANAAGVYSRLTDHTKYTGAHKERFDAE-GKGKGKSGR- 155
Query: 303 YLAGENAQQGYVGGYKGAGTYDK 371
A GYVG YK +YDK
Sbjct: 156 --ADTTENTGYVGAYKNKDSYDK 176
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 64.3 bits (155), Expect = 2e-10
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 129 VQELKTKICQ-GSPAGHGTTGVSADAATARLTDVKGYTGAHKERFDAETGKGKGIDGREY 305
+ E+K K+ G+P + A AA RLTD YTG+HKERFDA +GKGKGI GR
Sbjct: 113 LSEIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDA-SGKGKGIAGRRN 171
Query: 306 LAGENAQQGYVGGYKGAGTYD 368
+ + GYV GY+ TYD
Sbjct: 172 VVDGS---GYVSGYQHKDTYD 189
>sp|Q4L5U2|TRMD_STAHJ tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 245
Score = 32.7 bits (73), Expect = 0.52
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 225 HLSNEQLPHQQKL-RLYHGRQDYLDRF*FSILVLRLHKPNFLHSYKLQ 85
H + EQ H+QKL R YH R D LDR+ L F+ SYK Q
Sbjct: 199 HANIEQWRHEQKLIRTYHKRPDLLDRY-----PLTEDDEKFIESYKKQ 241
>sp|P16342|R1AB_CVMA5 Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7176
Score = 31.6 bits (70), Expect = 1.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 206 CRISRNSGCTMAGRTTLTDFSFQFLYCVFISQISCTHISFSHWSF 72
CR++ + C M+GR +LT S+Q C + ++ + + +SF
Sbjct: 3392 CRVTSSDFCVMSGRMSLTVMSYQMQGCQLVLTVTLQNPNTPKYSF 3436
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,461,969
Number of Sequences: 369166
Number of extensions: 993750
Number of successful extensions: 3531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3516
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)