Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H08
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q924T7|RNF31_MOUSE RING finger protein 31 37 0.058
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 35 0.13
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 33 0.64
sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chS... 33 0.64
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 32 1.9
sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-bindi... 31 2.4
sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2 31 2.4
sp|P06455|VE1_FPVL Replication protein E1 31 3.2
sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 31 3.2
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 30 4.1
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
Length = 1066
Score = 36.6 bits (83), Expect = 0.058
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 481 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 588
T L + ++W C CTF NE+A + C ICE R
Sbjct: 336 TGGLEPEPARDQWACQSCTFENEAAAVLCAICERPR 371
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 35.4 bits (80), Expect = 0.13
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 481 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 588
T L D +W C CTF NE+A + C ICE R
Sbjct: 342 TGGLEPDLARGRWACQSCTFENEAAAVLCSICERPR 377
Score = 30.4 bits (67), Expect = 4.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 517 WICLQCTFANESANLNCIIC 576
W C+ CTF N S C++C
Sbjct: 413 WYCIHCTFCNSSPGWVCVMC 432
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 33.1 bits (74), Expect = 0.64
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Frame = +1
Query: 166 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDPSRLEQAACNQADDCLDGKEMFLYLLHGF 345
T +K+ ++ + GFP Q + + D L Q +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQ-----NGDSAYLYLLSAR 124
Query: 346 ECGKENEIANSIGEFLLERKMKCQEALS-KSIAV-------PEPIKHFVAQRPTENLRRD 501
+ E ER+++ E L K + + P P K V Q P + D
Sbjct: 125 NTSLNPQ------ELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRG-QPD 177
Query: 502 DDGEK----WICLQCTFANESANLNCIICEHAR 588
E W C CTF N+ C +C AR
Sbjct: 178 AVPEPPPVGWQCPGCTFINKPTRPGCEMCCRAR 210
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chSNM1A)
Length = 972
Score = 33.1 bits (74), Expect = 0.64
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Frame = +1
Query: 370 ANSIGEFLL-------ERKMKCQEALSKSIAVPEPIKHFVAQRPTENLRRDDDGE 513
A+ GE+L+ ERKM C A +KS P P++ A++P++NL+ + E
Sbjct: 165 ASRAGEYLVNSTANTVERKMTCSTA-AKSSCFPSPVEDSQAEKPSKNLKNVPNNE 218
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 31.6 bits (70), Expect = 1.9
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 11/152 (7%)
Frame = +1
Query: 166 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDPSRLEQAACNQADDCLDGKEMFLYLLHGF 345
T +K+ ++ + GFP + Q + + D L + +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPSLQQWVVGQRLARDQETLHSHGIRR-----NGDSAYLYLLSAR 124
Query: 346 ECGKENEIANSIGEFLLERKMKCQEALS-KSIAV----------PEPIKHFVAQRPTENL 492
+ E +R+++ E L K + + P+P H +P
Sbjct: 125 NTSLNPQ------ELQRQRQLRMLEDLGFKDLTLQPRGPLEPVLPKPRTHQETGQPDAAP 178
Query: 493 RRDDDGEKWICLQCTFANESANLNCIICEHAR 588
G W C CTF N+ C +C AR
Sbjct: 179 ESPPVG--WQCPGCTFINKPTRPGCEMCCRAR 208
>sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-binding domain containing 1)
Length = 708
Score = 31.2 bits (69), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 511 EKWICLQCTFANESANLNCIICEHAR 588
+ W C CT+ N + C++C+H R
Sbjct: 151 QHWTCSVCTYENWAKAKRCVVCDHPR 176
>sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2
Length = 180
Score = 31.2 bits (69), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 475 RPTENLRRDDDGEKWICLQCTFANESANLNCIICE 579
RP + + D W C CTF N + C++C+
Sbjct: 9 RPKRHAKPSSDEGYWDCSVCTFRNSAEAFKCMMCD 43
>sp|P06455|VE1_FPVL Replication protein E1
Length = 152
Score = 30.8 bits (68), Expect = 3.2
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 310 GKEMFLYLLHGFECGKENEIANSIGEFLLERKMKCQEALSKSIAVP 447
GK MF Y L F G ANS F L+ +C+ AL + +P
Sbjct: 54 GKSMFAYSLIKFLNGSVLSFANSKSHFWLQPLTECKAALIDDVTLP 99
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3
protein)
Length = 758
Score = 30.8 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 493 RRDDDGEKWICLQCTFANESANLNCIICEHAR 588
+R G +W C QC F N N+ C+ C+ R
Sbjct: 305 KRQLTGSEWECPQCDFYNYGRNVACLRCDCKR 336
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 30.4 bits (67), Expect = 4.1
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Frame = +1
Query: 166 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDPSRLEQAACNQADDCLDGKEMFLYLLHGF 345
T +K+ ++ + GFP + Q + + D L + +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPSLQQWVVGQRLARDQETLHSHGIRR-----NGDGAYLYLLSAR 124
Query: 346 ECGKENEIANSIGEFLLERKMKCQEALSKSIAVPEPI--KHFVAQRPTE-NLRRDDDGEK 516
+ + + + ++ +S EP+ K Q P + + +
Sbjct: 125 NTSLNPQELQRQRQLRMLEDLGFKDLTLQSRGPLEPVLPKPRTNQEPGQPDAAPESPPVG 184
Query: 517 WICLQCTFANESANLNCIICEHAR 588
W C CTF N+ C +C AR
Sbjct: 185 WQCPGCTFINKPTRPGCEMCCRAR 208
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,260,801
Number of Sequences: 369166
Number of extensions: 1404105
Number of successful extensions: 3315
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3315
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)