Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H07
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 368 e-101
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 362 e-99
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 362 e-99
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 362 e-99
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 361 2e-99
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 333 3e-91
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 285 9e-77
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 253 6e-67
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 227 4e-59
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 206 9e-53
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 368 bits (945), Expect = e-101
Identities = 178/267 (66%), Positives = 215/267 (80%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QLD ALDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DY
Sbjct: 34 QLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDY 93
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDL
Sbjct: 94 NRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDL 153
Query: 361 DSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET 537
D GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +
Sbjct: 154 DHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGS 213
Query: 538 GCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 717
G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LR
Sbjct: 214 GTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 273
Query: 718 SGLSKSVEDQQRKLCQDVKIAIQNKNQ 798
S + + + +Q L D+ A++ K Q
Sbjct: 274 SVQTFADKSKQEALKNDLVEALKRKQQ 300
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 362 bits (928), Expect = e-99
Identities = 172/241 (71%), Positives = 202/241 (83%), Gaps = 1/241 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QLD ALDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DY
Sbjct: 5 QLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDL
Sbjct: 65 NRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDL 124
Query: 361 DSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET 537
D GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +
Sbjct: 125 DHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGS 184
Query: 538 GCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 717
G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LR
Sbjct: 185 GTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244
Query: 718 S 720
S
Sbjct: 245 S 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 362 bits (928), Expect = e-99
Identities = 172/241 (71%), Positives = 202/241 (83%), Gaps = 1/241 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QLD ALDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DY
Sbjct: 5 QLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDL
Sbjct: 65 NRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDL 124
Query: 361 DSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET 537
D GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S +
Sbjct: 125 DHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGS 184
Query: 538 GCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 717
G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LR
Sbjct: 185 GTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244
Query: 718 S 720
S
Sbjct: 245 S 245
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 362 bits (928), Expect = e-99
Identities = 176/266 (66%), Positives = 214/266 (80%), Gaps = 1/266 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
Q+D ALDLMRRLPPQ+I+K+L DLI+L PDLCEDLLSSVDQPLKI+KD + GKDYLL DY
Sbjct: 5 QMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSNSY PPLEDG +PS+R+R LEIEAN AF+ YREMYY+GGVSSVYLWDL
Sbjct: 65 NRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVYLWDL 124
Query: 361 DSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET 537
D GFA +LIKKAGD K GCWDSIHV+EV+EK +GR A YKLTST MLWL+T +
Sbjct: 125 DHGFAAVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGS 184
Query: 538 GCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 717
G NLGGSLTR E++ +S+++ HI NIG++VE+MEN IR LN++YFG +K++V+ LR
Sbjct: 185 GTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLR 244
Query: 718 SGLSKSVEDQQRKLCQDVKIAIQNKN 795
S S + + QQ + QD+ AI +N
Sbjct: 245 STQSLADQRQQAAMKQDLAAAILRRN 270
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 361 bits (926), Expect = 2e-99
Identities = 171/241 (70%), Positives = 203/241 (84%), Gaps = 1/241 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QLD ALDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DY
Sbjct: 5 QLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDL
Sbjct: 65 NRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDL 124
Query: 361 DSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET 537
D GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T + +
Sbjct: 125 DHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGS 184
Query: 538 GCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 717
G NLGGSLTR EK+ +SD++ HI NIGRLVEDMEN IR LN++YFG +K++V+ LR
Sbjct: 185 GTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244
Query: 718 S 720
S
Sbjct: 245 S 245
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 333 bits (855), Expect = 3e-91
Identities = 161/266 (60%), Positives = 207/266 (77%), Gaps = 2/266 (0%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QLD ALDLMRRLPPQ DK+L DLI+L P L +DLLS++DQPLKI+ D +TGK YLL DY
Sbjct: 5 QLDCALDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRDGDSYRSPWSN+YDPPLEDG LPS++ R +EIEAN AFE YR++Y++GGVSSVY WDL
Sbjct: 65 NRDGDSYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDL 124
Query: 361 DS-GFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSE 534
D+ GFAG VLIKK GD K+ TGCWDSIHVIE+ E+ R A YKLTSTIMLWL+T S
Sbjct: 125 DNGGFAGIVLIKKEGDGAKNITGCWDSIHVIEITER--ARQAHYKLTSTIMLWLQTNKSS 182
Query: 535 TGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSL 714
+G NLGGSLTR E + P++D N H+ N+GR++ED E+ +R +N++YFG +K ++ L
Sbjct: 183 SGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQESKMRLTINEIYFGKTKKVMSDL 242
Query: 715 RSGLSKSVEDQQRKLCQDVKIAIQNK 792
RS +S ++Q ++ +++ A+ N+
Sbjct: 243 RSTEKQSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 285 bits (730), Expect = 9e-77
Identities = 141/268 (52%), Positives = 186/268 (69%), Gaps = 4/268 (1%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDY 180
QL LDLMRRLPP +I+ +L L++LVPDL EDLLSS+DQPLK++ D + KDYLL DY
Sbjct: 5 QLSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDY 64
Query: 181 NRDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDL 360
NRD DSYRSPWSN YDPPL PS ++R +E++AN+ FE+Y +Y++GGVSSVY WDL
Sbjct: 65 NRDADSYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDL 124
Query: 361 DSGFAGAVLIKKAGDI----KSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQN 528
D FA VL+KK D + G WDSIHV+EV + G A YKLTST+ML +ET N
Sbjct: 125 DDNFAAVVLMKKTQDQSKKGQPMRGTWDSIHVVEV-KLGKKDKAVYKLTSTVMLSIETDN 183
Query: 529 SETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVD 708
TG NL GSLTR EKE ++ + H VNIG++VEDME+ +R+ L +YFG +K +V+
Sbjct: 184 DNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVN 243
Query: 709 SLRSGLSKSVEDQQRKLCQDVKIAIQNK 792
+LR+ S ++++ L + AI N+
Sbjct: 244 TLRNATGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 253 bits (645), Expect = 6e-67
Identities = 127/243 (52%), Positives = 169/243 (69%), Gaps = 5/243 (2%)
Frame = +1
Query: 7 DSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNR 186
D+ALDL+RRL P+ I K+L ++ + PDL + LLSSVDQPLK++ +++G YLL D+NR
Sbjct: 5 DAALDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNR 64
Query: 187 DGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDS 366
DGDSYRSPWSN YDPPLEDG + +DRVR LE+ N+A VY ++YY+GGVSSVYLWD D
Sbjct: 65 DGDSYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDD 124
Query: 367 GFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSE---- 534
+AGAVLIKKA S+ WDSIHV E Y+LTSTI+L+L + + E
Sbjct: 125 SYAGAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYDYRLTSTIILFLSSGSEEQSAL 182
Query: 535 -TGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 711
+ NL G LTR T + +P +D + I N+G+LVE+ME +R L DVYFG +K++++
Sbjct: 183 PSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYFGKTKDIINQ 242
Query: 712 LRS 720
RS
Sbjct: 243 TRS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 227 bits (578), Expect = 4e-59
Identities = 113/246 (45%), Positives = 164/246 (66%), Gaps = 8/246 (3%)
Frame = +1
Query: 4 LDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYN 183
+++AL L+RR+PP++ + +L L+ L+P DLLS VD PL++ +D ++GKD++L +YN
Sbjct: 1 MEAALGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQVLRDIESGKDFILCEYN 60
Query: 184 RDGDSYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLD 363
RD DSYRSPWSN Y PPLED PS +R LE+EAN F +YR+ YY+GG+SSVY+W+ D
Sbjct: 61 RDADSYRSPWSNKYLPPLEDALYPSSELRKLEVEANDIFAIYRDQYYEGGISSVYMWEDD 120
Query: 364 S-GFAGAVLIKKAGDIKS-------ATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLE 519
+ GF LIKK G G WD+IHVI+V + A+Y LTSTIML L
Sbjct: 121 NEGFVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSE-EEEMAQYCLTSTIMLSLT 179
Query: 520 TQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKN 699
T + +G F L GS+ R + E+ ++D H+ N+GR++E++E +R L+ VYFG ++
Sbjct: 180 TDDESSGKFGLSGSIRRQMKMELAVAD--GHLCNMGRMIEELEGKLRNSLDQVYFGKTRE 237
Query: 700 LVDSLR 717
+V +LR
Sbjct: 238 MVCTLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 206 bits (523), Expect = 9e-53
Identities = 118/276 (42%), Positives = 171/276 (61%), Gaps = 21/276 (7%)
Frame = +1
Query: 1 QLDSALDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTK-TGKDYLLGD 177
Q D+ALDL+RRL P + ++L +LIEL P+L +DLLSSVD PL KD+ + ++YL D
Sbjct: 5 QFDAALDLLRRLNPTTLQENLNNLIELQPNLAQDLLSSVDVPLSTQKDSADSNREYLCCD 64
Query: 178 YNRDGDSYRSPWSNSYDPPL-----EDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSS 342
YNRD DS+RSPWSN+Y P L +D PS +R LEI AN +F+VYR++YY+GG+SS
Sbjct: 65 YNRDIDSFRSPWSNTYYPELSPKDLQDSPFPSAPLRKLEILANDSFDVYRDLYYEGGISS 124
Query: 343 VYLWDLDS------GFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNA-RYKLTST 501
VYLWDL+ FAG VL KK +S WDSIHV EV S ++ Y++T+T
Sbjct: 125 VYLWDLNEEDFNGHDFAGVVLFKKN---QSDHSNWDSIHVFEVTTSPSSPDSFNYRVTTT 181
Query: 502 IMLWLE-TQNSETGCFNLGGSLTRMTEKEVPLSDA-------NNHIVNIGRLVEDMENSI 657
I+L L+ T+ + L G+LTR TEK++ + + +H+ N+G L+ED+E+ +
Sbjct: 182 IILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQM 241
Query: 658 RKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQ 765
R L VYF ++++ ++ S ++ K Q
Sbjct: 242 RNLLETVYFEKTRDIFHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,331,586
Number of Sequences: 369166
Number of extensions: 2109413
Number of successful extensions: 5646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5613
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)