Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_H03
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5GH76|XKR4_HUMAN XK-related protein 4 34 0.17
sp|Q49LS4|XKR4_PANTR XK-related protein 4 34 0.17
sp|Q5GH67|XKR4_MOUSE XK-related protein 4 33 0.38
sp|Q5GH59|XKR4_RAT XK-related protein 4 33 0.38
sp|Q49LS9|XKR4_TETNG XK-related protein 4 33 0.49
sp|P10930|VG12_BPT4 Short tail fiber protein (Protein Gp12)... 32 1.1
sp|Q42843|HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplas... 31 1.9
sp|Q96563|HEM12_HORVU Glutamyl-tRNA reductase 2 (GluTR) 31 1.9
sp|Q8CXQ3|TRMU_MYCPE Probable tRNA (5-methylaminomethyl-2-t... 30 3.2
sp|P16708|UFAP_PIG Uteroferrin-associated protein precursor... 30 3.2
>sp|Q5GH76|XKR4_HUMAN XK-related protein 4
Length = 650
Score = 34.3 bits (77), Expect = 0.17
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +1
Query: 253 GQFWQ----LLMGRQNYLCCKTDH-QIMWKLGISWIDVSMKHLLLDILE*RPKILLETRK 417
GQ W+ + +G ++ + D + WK+ + DVSM HLL LE P+++L+
Sbjct: 265 GQIWRYFHTIYLGIRSRQSGENDRWRFYWKMVYEYADVSMLHLLATFLESAPQLVLQLCI 324
Query: 418 KVVMHSAQ 441
V HS Q
Sbjct: 325 IVQTHSLQ 332
>sp|Q49LS4|XKR4_PANTR XK-related protein 4
Length = 650
Score = 34.3 bits (77), Expect = 0.17
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +1
Query: 253 GQFWQ----LLMGRQNYLCCKTDH-QIMWKLGISWIDVSMKHLLLDILE*RPKILLETRK 417
GQ W+ + +G ++ + D + WK+ + DVSM HLL LE P+++L+
Sbjct: 265 GQIWRYFHTIYLGIRSRQSGENDRWRFYWKMVYEYADVSMLHLLATFLESAPQLVLQLCI 324
Query: 418 KVVMHSAQ 441
V HS Q
Sbjct: 325 IVQTHSLQ 332
>sp|Q5GH67|XKR4_MOUSE XK-related protein 4
Length = 647
Score = 33.1 bits (74), Expect = 0.38
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 322 WKLGISWIDVSMKHLLLDILE*RPKILLETRKKVVMHSAQ 441
WK+ + DVSM HLL LE P+++L+ V HS Q
Sbjct: 290 WKMVYEYADVSMLHLLATFLESAPQLVLQLCIIVQTHSLQ 329
>sp|Q5GH59|XKR4_RAT XK-related protein 4
Length = 647
Score = 33.1 bits (74), Expect = 0.38
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 322 WKLGISWIDVSMKHLLLDILE*RPKILLETRKKVVMHSAQ 441
WK+ + DVSM HLL LE P+++L+ V HS Q
Sbjct: 290 WKMVYEYADVSMLHLLATFLESAPQLVLQLCIIVQTHSLQ 329
>sp|Q49LS9|XKR4_TETNG XK-related protein 4
Length = 498
Score = 32.7 bits (73), Expect = 0.49
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Frame = +1
Query: 253 GQFWQLL----MGRQNYLCCKTDH-QIMWKLGISWIDVSMKHLLLDILE*RPKILLE 408
GQ W+ + +G Q+ +T+ + W++ + DVSM HLL LE P+++L+
Sbjct: 228 GQIWRYIHTIYLGVQSRQSAETERWRYYWRMVYEFADVSMLHLLATFLESAPQLVLQ 284
>sp|P10930|VG12_BPT4 Short tail fiber protein (Protein Gp12) (p12)
Length = 527
Score = 31.6 bits (70), Expect = 1.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 169 VLGILTGEDILTIASGHLSITGIIKLSRYFTPSNRII 59
+ G L ED TIA+G +ITG ++++ + NRI+
Sbjct: 296 IYGTLRIEDTFTIANGGANITGTVRMTGGYIQGNRIV 332
>sp|Q42843|HEM11_HORVU Glutamyl-tRNA reductase 1, chloroplast precursor (GluTR)
Length = 527
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = +3
Query: 120 WPEAIVKMSSPVNIPRTAWLYRNLLDELWIKAGDKATNI----SWYSKRAVLAAAYGSTE 287
WP AI +++S +I A L E+++ A I W SK++ + A+
Sbjct: 103 WPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREH 162
Query: 288 LFMLQDRSPDYVETWHFLDRRLNEASSI---GHIGIAAKDIIRNSQES 422
LFML+D T H + S + G I K ++RN Q S
Sbjct: 163 LFMLRDSD----ATRHLFEVSAGLDSLVLGEGQILAQVKQVVRNGQNS 206
>sp|Q96563|HEM12_HORVU Glutamyl-tRNA reductase 2 (GluTR)
Length = 465
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Frame = +3
Query: 120 WPEAIVKMSSPVNIPRTAWLYRNLLDELWIKAGDKATNI----SWYSKRAVLAAAYGSTE 287
WP AI +++S +I A L E+++ A I W SK++ + A+
Sbjct: 41 WPRAISELTSLNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREH 100
Query: 288 LFMLQDRSPDYVETWHFLDRRLNEASSI---GHIGIAAKDIIRNSQES 422
LFML+D T H + S + G I K ++RN Q S
Sbjct: 101 LFMLRDSG----ATRHLFEVSAGLDSLVLGEGQILAQVKQVVRNGQNS 144
>sp|Q8CXQ3|TRMU_MYCPE Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
Length = 370
Score = 30.0 bits (66), Expect = 3.2
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 273 YGSTELFMLQDRSPDYVETWHFLDRRLNEASSIGHIGIAAKDI 401
+G+ + ++ DY+ T H+ D R N+A++I + + AKDI
Sbjct: 115 FGAFHKYCFENFDCDYIATGHYADVRFNQANNIYEL-LEAKDI 156
>sp|P16708|UFAP_PIG Uteroferrin-associated protein precursor (UFAP)
Length = 417
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 334 ISWIDVSMKHLLLDILE*RPKILLETRKKVVMHSAQYFETSLDFTENNLFLMK 492
I +DV++K+L + ++ P LLE ++V +A++ + +D TE N +K
Sbjct: 101 IDVLDVALKNLAVMLMAQAPTALLEIVHELVNRTAKHQDILIDRTEMNQMFLK 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,109,773
Number of Sequences: 369166
Number of extensions: 1170727
Number of successful extensions: 3259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3259
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)