Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G24-2
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VIG3|TSGA2_MOUSE Testis-specific gene A2 protein (Male... 135 4e-32
sp|Q8WYR4|TSGA2_HUMAN Testis-specific gene A2 protein (Male... 131 1e-30
sp|Q6VTH5|TSGA2_CYPCA Testis-specific gene A2-like protein ... 115 5e-26
sp|P0A9J8|PHEA_ECOLI P-protein [Includes: Chorismate mutase... 102 5e-22
sp|Q02286|PHEA_ENTAG P-protein [Includes: Chorismate mutase... 83 4e-16
sp|P43900|PHEA_HAEIN P-protein [Includes: Chorismate mutase... 71 1e-12
sp|Q9M1K2|PI5K4_ARATH Putative phosphatidylinositol-4-phosp... 69 4e-12
sp|Q56YP2|PI5K1_ARATH Phosphatidylinositol-4-phosphate 5-ki... 68 1e-11
sp|Q9SLG9|PI5K5_ARATH Phosphatidylinositol-4-phosphate 5-ki... 68 1e-11
sp|Q8L796|PI5K2_ARATH Phosphatidylinositol-4-phosphate 5-ki... 68 1e-11
>sp|Q8VIG3|TSGA2_MOUSE Testis-specific gene A2 protein (Male meiotic metaphase
chromosome-associated acidic protein) (Meichroacidin)
Length = 301
Score = 135 bits (341), Expect = 4e-32
Identities = 63/94 (67%), Positives = 72/94 (76%)
Frame = +2
Query: 209 MSDAEDENMEEEGLINLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYI 388
MSD E +EEEG +LG Y GERNE ERHG GKARLPNGD YEG Y+FGKRHG GTY
Sbjct: 1 MSDLGSEELEEEGENDLGEYEGERNEVGERHGHGKARLPNGDTYEGSYEFGKRHGQGTYK 60
Query: 389 FKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
FK+GARY G+Y +N K G+G F Y DGS+YEG+W
Sbjct: 61 FKNGARYTGDYVKNKKHGQGTFIYPDGSRYEGEW 94
>sp|Q8WYR4|TSGA2_HUMAN Testis-specific gene A2 protein (Male meiotic metaphase
chromosome-associated acidic protein) (Meichroacidin)
Length = 309
Score = 131 bits (329), Expect = 1e-30
Identities = 61/94 (64%), Positives = 70/94 (74%)
Frame = +2
Query: 209 MSDAEDENMEEEGLINLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYI 388
MSD E +EEEG ++G Y G RNE ERHG G+ARLPNGD YEG Y+FGKRHG G Y
Sbjct: 1 MSDLGSEELEEEGENDIGEYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYK 60
Query: 389 FKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
FK+GARYIGEY N K G+G F Y DGS+YEG+W
Sbjct: 61 FKNGARYIGEYVRNKKHGQGTFIYPDGSRYEGEW 94
>sp|Q6VTH5|TSGA2_CYPCA Testis-specific gene A2-like protein (Meichroacidin-like
sperm-specific axonemal protein) (Meichroacidin homolog)
Length = 218
Score = 115 bits (288), Expect = 5e-26
Identities = 57/94 (60%), Positives = 67/94 (71%)
Frame = +2
Query: 209 MSDAEDENMEEEGLINLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYI 388
MSDA E +EE +LG Y G+RNE ERHG GKA LP GD Y+G Y+ GKR G GTY
Sbjct: 1 MSDAGTEEFDEEQG-SLGEYEGDRNEAGERHGQGKAVLPRGDTYQGAYENGKRCGQGTYK 59
Query: 389 FKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
FK+GARY GE+ N+K G+G+ YY DGSKYEG W
Sbjct: 60 FKNGARYTGEWYMNLKHGQGVLYYPDGSKYEGSW 93
>sp|P0A9J8|PHEA_ECOLI P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase
(PDT)]
sp|P0A9K0|PHEA_SHIFL P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase
(PDT)]
sp|P0A9J9|PHEA_ECO57 P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase
(PDT)]
Length = 386
Score = 102 bits (254), Expect = 5e-22
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +2
Query: 2 AVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTIN 154
AVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTIN
Sbjct: 154 AVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTIN 204
>sp|Q02286|PHEA_ENTAG P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase
(PDT)]
Length = 387
Score = 82.8 bits (203), Expect = 4e-16
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = +2
Query: 2 AVVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTI 151
AV+PIENTSSG+INDVYDLLQ TSLSIVGE+TL IDHC+LV+G TDL I
Sbjct: 154 AVMPIENTSSGSINDVYDLLQQTSLSIVGELTLPIDHCVLVNGPTDLQQI 203
>sp|P43900|PHEA_HAEIN P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase
(PDT)]
Length = 385
Score = 71.2 bits (173), Expect = 1e-12
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = +2
Query: 5 VVPIENTSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTIN 154
V+P+ENT+SGAIN+VYDLLQHT LS+VGE+ I HC+LV+ TDL+ I+
Sbjct: 155 VLPLENTTSGAINEVYDLLQHTDLSLVGELAYPIKHCVLVNDKTDLNQID 204
>sp|Q9M1K2|PI5K4_ARATH Putative phosphatidylinositol-4-phosphate 5-kinase 4 (AtPIP5K4)
(1-phosphatidylinositol-4-phosphate kinase 4)
(PtdIns(4)P-5-kinase 4) (Diphosphoinositide kinase 4)
Length = 779
Score = 69.3 bits (168), Expect = 4e-12
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +2
Query: 263 TYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCG 442
TY G+ N +HG G R NGDVY+G ++ G + G Y ++ G+ Y+GE+K CG
Sbjct: 145 TYKGQWVMNL-KHGHGIKRFANGDVYDGEWRRGLQEAQGKYQWRDGSYYMGEWKNATICG 203
Query: 443 KGIFYYLDGSKYEGDW 490
KG F + DG++Y+G W
Sbjct: 204 KGTFIWTDGNRYDGFW 219
Score = 53.1 bits (126), Expect = 3e-07
Identities = 27/76 (35%), Positives = 40/76 (52%)
Frame = +2
Query: 263 TYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCG 442
TY GE G G P+GD Y+G + +HGHG F +G Y GE++ ++
Sbjct: 122 TYEGEFKSGY-MDGVGLYTGPSGDTYKGQWVMNLKHGHGIKRFANGDVYDGEWRRGLQEA 180
Query: 443 KGIFYYLDGSKYEGDW 490
+G + + DGS Y G+W
Sbjct: 181 QGKYQWRDGSYYMGEW 196
Score = 52.8 bits (125), Expect = 4e-07
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 320 LPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
LPNGD Y G + HGHG Y++ G YIG++ G+G F + G+ YEG++
Sbjct: 71 LPNGDYYTGQWYDSFPHGHGKYLWTDGCMYIGDWYNGKTMGRGKFGWPSGATYEGEF 127
Score = 52.8 bits (125), Expect = 4e-07
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y+G+ K G GK P+G YEG ++ G G G Y SG Y G++ N+K G
Sbjct: 100 YIGDWYNGKTM-GRGKFGWPSGATYEGEFKSGYMDGVGLYTGPSGDTYKGQWVMNLKHGH 158
Query: 446 GIFYYLDGSKYEGDW 490
GI + +G Y+G+W
Sbjct: 159 GIKRFANGDVYDGEW 173
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 299 HGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKY 478
HG GK +G +Y G + GK G G + + SGA Y GE+K G G++ G Y
Sbjct: 87 HGHGKYLWTDGCMYIGDWYNGKTMGRGKFGWPSGATYEGEFKSGYMDGVGLYTGPSGDTY 146
Query: 479 EGDW 490
+G W
Sbjct: 147 KGQW 150
Score = 34.7 bits (78), Expect = 0.12
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y+GE +N G G +G+ Y+GF+ G G+GT+ + G+ Y+G + + +
Sbjct: 192 YMGEW-KNATICGKGTFIWTDGNRYDGFWDDGFPRGNGTFKWADGSFYVGHWSNDPEEMN 250
Query: 446 GIFYYLDGSKYEGDW 490
G YY G +W
Sbjct: 251 GT-YYPSGDDGSPEW 264
Score = 32.3 bits (72), Expect = 0.61
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 374 HGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
H I +G Y G++ ++ G G + + DG Y GDW
Sbjct: 66 HAERILPNGDYYTGQWYDSFPHGHGKYLWTDGCMYIGDW 104
>sp|Q56YP2|PI5K1_ARATH Phosphatidylinositol-4-phosphate 5-kinase 1 (AtPIP5K1)
(1-phosphatidylinositol-4-phosphate kinase 1)
(PtdIns(4)P-5-kinase 1) (Diphosphoinositide kinase 1)
Length = 752
Score = 68.2 bits (165), Expect = 1e-11
Identities = 29/77 (37%), Positives = 49/77 (63%)
Frame = +2
Query: 260 GTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKC 439
GT+V +R +HG G+ R NGD YEG ++ + G G Y++++G +Y GE++ +
Sbjct: 152 GTWVADR-----KHGHGQKRYANGDFYEGTWRRNLQDGRGRYVWRNGNQYTGEWRSGVIS 206
Query: 440 GKGIFYYLDGSKYEGDW 490
GKG+ + +G++YEG W
Sbjct: 207 GKGLLVWPNGNRYEGLW 223
Score = 56.6 bits (135), Expect = 3e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 320 LPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
LPNGD+Y G + G HG G Y++K G Y G++K GKG F + G+ YEG++
Sbjct: 75 LPNGDLYIGSFSGGFPHGSGKYLWKDGCMYEGDWKRGKASGKGKFSWPSGATYEGEF 131
Score = 55.8 bits (133), Expect = 5e-08
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +2
Query: 263 TYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCG 442
TY GE + GFG +GD Y G + ++HGHG + +G Y G ++ N++ G
Sbjct: 126 TYEGEFKSGR-MEGFGTFTGADGDTYRGTWVADRKHGHGQKRYANGDFYEGTWRRNLQDG 184
Query: 443 KGIFYYLDGSKYEGDW 490
+G + + +G++Y G+W
Sbjct: 185 RGRYVWRNGNQYTGEW 200
Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/84 (38%), Positives = 42/84 (50%)
Frame = +2
Query: 239 EEGLINLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGE 418
E+ L N Y+G + HG GK +G +YEG ++ GK G G + + SGA Y GE
Sbjct: 72 EKPLPNGDLYIGSFSGGFP-HGSGKYLWKDGCMYEGDWKRGKASGKGKFSWPSGATYEGE 130
Query: 419 YKENIKCGKGIFYYLDGSKYEGDW 490
+K G G F DG Y G W
Sbjct: 131 FKSGRMEGFGTFTGADGDTYRGTW 154
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/75 (36%), Positives = 36/75 (48%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y G+ K G GK P+G YEG ++ G+ G GT+ G Y G + + K G
Sbjct: 104 YEGDWKRGKAS-GKGKFSWPSGATYEGEFKSGRMEGFGTFTGADGDTYRGTWVADRKHGH 162
Query: 446 GIFYYLDGSKYEGDW 490
G Y +G YEG W
Sbjct: 163 GQKRYANGDFYEGTW 177
Score = 32.7 bits (73), Expect = 0.46
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 302 GFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKEN 430
G G PNG+ YEG ++ G G+G + + G+ +G + E+
Sbjct: 207 GKGLLVWPNGNRYEGLWENGIPKGNGVFTWSDGSSCVGAWNES 249
>sp|Q9SLG9|PI5K5_ARATH Phosphatidylinositol-4-phosphate 5-kinase 5 (AtPIP5K5)
(1-phosphatidylinositol-4-phosphate kinase 5)
(PtdIns(4)P-5-kinase 5) (Diphosphoinositide kinase 5)
Length = 772
Score = 68.2 bits (165), Expect = 1e-11
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Frame = +2
Query: 257 LGTYVGERNENKE-------RHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIG 415
+GTY G + + +HG G NGD Y+G ++ G + G G Y + G+ YIG
Sbjct: 133 IGTYTGPSGDAYKGQWVMNLKHGHGVKSFANGDAYDGEWRRGLQEGQGKYQWSDGSYYIG 192
Query: 416 EYKENIKCGKGIFYYLDGSKYEGDW 490
E+K CGKG F + +G++Y+G W
Sbjct: 193 EWKNGTICGKGSFVWTNGNRYDGFW 217
Score = 57.4 bits (137), Expect = 2e-08
Identities = 28/76 (36%), Positives = 41/76 (53%)
Frame = +2
Query: 263 TYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCG 442
TY GE G G P+GD Y+G + +HGHG F +G Y GE++ ++ G
Sbjct: 120 TYEGEFKSGY-MDGIGTYTGPSGDAYKGQWVMNLKHGHGVKSFANGDAYDGEWRRGLQEG 178
Query: 443 KGIFYYLDGSKYEGDW 490
+G + + DGS Y G+W
Sbjct: 179 QGKYQWSDGSYYIGEW 194
Score = 55.1 bits (131), Expect = 9e-08
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y+G+ K G GK P+G YEG ++ G G GTY SG Y G++ N+K G
Sbjct: 98 YIGDWYNGKTM-GNGKFGWPSGATYEGEFKSGYMDGIGTYTGPSGDAYKGQWVMNLKHGH 156
Query: 446 GIFYYLDGSKYEGDW 490
G+ + +G Y+G+W
Sbjct: 157 GVKSFANGDAYDGEW 171
Score = 52.0 bits (123), Expect = 7e-07
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +2
Query: 320 LPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
LPNGD Y G + HGHG Y++ G YIG++ G G F + G+ YEG++
Sbjct: 69 LPNGDYYTGQWYDSFPHGHGKYLWTDGCMYIGDWYNGKTMGNGKFGWPSGATYEGEF 125
Score = 47.8 bits (112), Expect = 1e-05
Identities = 32/99 (32%), Positives = 45/99 (45%)
Frame = +2
Query: 194 EEILKMSDAEDENMEEEGLINLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHG 373
E S E+ E L N Y G+ ++ HG GK +G +Y G + GK G
Sbjct: 51 ETTTNRSSLEEFYHAERVLPNGDYYTGQWYDSFP-HGHGKYLWTDGCMYIGDWYNGKTMG 109
Query: 374 HGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
+G + + SGA Y GE+K G G + G Y+G W
Sbjct: 110 NGKFGWPSGATYEGEFKSGYMDGIGTYTGPSGDAYKGQW 148
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y+GE +N G G NG+ Y+GF+ G G+GT+ + +G+ Y+G + ++ +
Sbjct: 190 YIGEW-KNGTICGKGSFVWTNGNRYDGFWDEGFPRGNGTFKWDNGSFYVGHWSKDPEEMN 248
Query: 446 GIFYYLDGSKYEGDW 490
G YY G++ +W
Sbjct: 249 GT-YYPSGNEGNLEW 262
>sp|Q8L796|PI5K2_ARATH Phosphatidylinositol-4-phosphate 5-kinase 2 (AtPIP5K2)
(1-phosphatidylinositol-4-phosphate kinase 2)
(PtdIns(4)P-5-kinase 2) (Diphosphoinositide kinase 2)
Length = 754
Score = 67.8 bits (164), Expect = 1e-11
Identities = 28/77 (36%), Positives = 48/77 (62%)
Frame = +2
Query: 260 GTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKC 439
G++V +R + G G+ R NGD YEG ++ + G G Y++ +G +Y GE++ + C
Sbjct: 153 GSWVADRKQ-----GHGQKRYANGDYYEGTWRRNLQDGRGRYVWMNGNQYTGEWRNGVIC 207
Query: 440 GKGIFYYLDGSKYEGDW 490
GKG+ + +G++YEG W
Sbjct: 208 GKGVLAWPNGNRYEGQW 224
Score = 55.5 bits (132), Expect = 7e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 320 LPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKYEGDW 490
LPNGD+Y G + G +G G Y++K G Y GE+K GKG F + G+ YEG++
Sbjct: 76 LPNGDLYMGTFSGGFPNGSGKYLWKDGCMYEGEWKRGKASGKGKFSWPSGATYEGEF 132
Score = 53.1 bits (126), Expect = 3e-07
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +2
Query: 299 HGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGKGIFYYLDGSKY 478
+G GK +G +YEG ++ GK G G + + SGA Y GE+K G G F +DG Y
Sbjct: 92 NGSGKYLWKDGCMYEGEWKRGKASGKGKFSWPSGATYEGEFKSGRMEGSGTFVGVDGDTY 151
Query: 479 EGDW 490
G W
Sbjct: 152 RGSW 155
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/75 (37%), Positives = 37/75 (49%)
Frame = +2
Query: 266 YVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCGK 445
Y GE K G GK P+G YEG ++ G+ G GT++ G Y G + + K G
Sbjct: 105 YEGEWKRGKAS-GKGKFSWPSGATYEGEFKSGRMEGSGTFVGVDGDTYRGSWVADRKQGH 163
Query: 446 GIFYYLDGSKYEGDW 490
G Y +G YEG W
Sbjct: 164 GQKRYANGDYYEGTW 178
Score = 50.4 bits (119), Expect = 2e-06
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +2
Query: 263 TYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKENIKCG 442
TY GE + G G +GD Y G + ++ GHG + +G Y G ++ N++ G
Sbjct: 127 TYEGEFKSGR-MEGSGTFVGVDGDTYRGSWVADRKQGHGQKRYANGDYYEGTWRRNLQDG 185
Query: 443 KGIFYYLDGSKYEGDW 490
+G + +++G++Y G+W
Sbjct: 186 RGRYVWMNGNQYTGEW 201
Score = 35.0 bits (79), Expect = 0.094
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +2
Query: 251 INLGTYVGERNENKERHGFGKARLPNGDVYEGFYQFGKRHGHGTYIFKSGARYIGEYKEN 430
+N Y GE N G G PNG+ YEG ++ G G G + + G+ +IG + E+
Sbjct: 192 MNGNQYTGEWR-NGVICGKGVLAWPNGNRYEGQWENGVPKGSGVFTWADGSSWIGSWNES 250
Query: 431 IKCGKGIF 454
+ F
Sbjct: 251 SNLMRNFF 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,575,707
Number of Sequences: 369166
Number of extensions: 1344977
Number of successful extensions: 3944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3849
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)