Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G18
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protei... 33 1.3
sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein ... 33 1.3
sp|P13821|SANT_PLAFW S-antigen protein precursor 33 1.3
sp|P51592|HYD_DROME Ubiquitin--protein ligase hyd (Hyperpla... 32 1.7
sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protei... 32 1.7
sp|Q645Z0|T2R60_GORGO Taste receptor type 2 member 60 (T2R6... 31 4.8
sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like... 30 6.3
sp|O13166|TLE2_BRARE Groucho 2 protein 30 8.3
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 precursor (Notch 1) (Motch
A) (mT14) (p300) [Contains: Notch 1 extracellular
truncation; Notch 1 intracellular domain]
Length = 2531
Score = 32.7 bits (73), Expect = 1.3
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Frame = +2
Query: 590 QVNPVYIGVSLMALTFFMVFCILTIKYYRRCH-----------STSGKKRRYGRAYKDKE 736
Q++ +Y+ + L FF+ +L + RR H S + KK+R +D
Sbjct: 1723 QLHLMYVAAAAFVLLFFVGCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSV 1782
Query: 737 GFQPLTQEDDG-------NDDGNSDPETEEY 808
G +PL DG N+ G+ D ET+++
Sbjct: 1783 GLKPLKNASDGALMDDNQNEWGDEDLETKKF 1813
>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 precursor (Notch 1)
[Contains: Notch 1 extracellular truncation; Notch 1
intracellular domain]
Length = 2531
Score = 32.7 bits (73), Expect = 1.3
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Frame = +2
Query: 590 QVNPVYIGVSLMALTFFMVFCILTIKYYRRCH-----------STSGKKRRYGRAYKDKE 736
Q++ +Y+ + L FF+ +L + RR H S + KK+R +D
Sbjct: 1723 QLHLMYVAAAAFVLLFFVGCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSV 1782
Query: 737 GFQPLTQEDDG-------NDDGNSDPETEEY 808
G +PL DG N+ G+ D ET+++
Sbjct: 1783 GLKPLKNASDGALMDDNQNEWGDEDLETKKF 1813
>sp|P13821|SANT_PLAFW S-antigen protein precursor
Length = 640
Score = 32.7 bits (73), Expect = 1.3
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 653 ILTIKYYRRCHSTSGKKRRYGRAYKDKEGFQPLTQEDDGNDDGNSDPETE 802
I IKYY R + S KK G+ Y+D E + +ED +++ N+D E +
Sbjct: 35 IYGIKYYLR-NGLSDKKNGKGQKYQDLEEDENDDEEDSNSEESNNDEENK 83
>sp|P51592|HYD_DROME Ubiquitin--protein ligase hyd (Hyperplastic discs protein)
Length = 2885
Score = 32.3 bits (72), Expect = 1.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 686 STSGKKRRYGRAYKDKEGFQPLTQEDDGNDDGNSDPETEEY 808
+T G + G + + E QE+DG++DG SD +++E+
Sbjct: 1683 ATVGSENDIGVLFLEDESGDSSAQEEDGSEDGESDDQSDEF 1723
>sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1 precursor (Notch 1) (hN1)
(Translocation-associated notch protein TAN-1) [Contains:
Notch 1 extracellular truncation; Notch 1 intracellular
domain]
Length = 2556
Score = 32.3 bits (72), Expect = 1.7
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Frame = +2
Query: 590 QVNPVYIGVSLMALTFFMVFCILTIKYYRRCH-----------STSGKKRRYGRAYKDKE 736
Q++ +Y+ + L FF+ +L + RR H S + KK+R +D
Sbjct: 1734 QLHFMYVAAAAFVLLFFVGCGVLLSRKRRRQHGQLWFPEGFKVSEASKKKRREPLGEDSV 1793
Query: 737 GFQPLTQEDDG-------NDDGNSDPETEEY 808
G +PL DG N+ G+ D ET+++
Sbjct: 1794 GLKPLKNASDGALMDDNQNEWGDEDLETKKF 1824
>sp|Q645Z0|T2R60_GORGO Taste receptor type 2 member 60 (T2R60) (T2R56)
Length = 318
Score = 30.8 bits (68), Expect = 4.8
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = -3
Query: 829 WMSTWSSIFFCFRXXXXXXXXXIFLG*RLESFLVFIGTPVSTLFSTGRMT--TTIVFYC* 656
W STW S+F+C + ++L +L +L +I LFS+ ++ TTI+F+
Sbjct: 109 WFSTWLSVFYCVKIAAFTHPVFLWLKHKLSGWLPWI------LFSSVGLSSFTTILFFIG 162
Query: 655 NTKYHK 638
N + ++
Sbjct: 163 NHRMYQ 168
>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 (Pseudo-response
regulator 3)
Length = 495
Score = 30.4 bits (67), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 671 YRRCHSTSGKKRRYGRAYKDKEGFQPLTQEDDGNDDGNSDPETEEYATPRG 823
+RRCHS+SG G DK+ +P + + ND SD E + G
Sbjct: 183 WRRCHSSSGSGSESG--IHDKKSVKPESTQGSENDASISDEHRNESGSSGG 231
>sp|O13166|TLE2_BRARE Groucho 2 protein
Length = 761
Score = 30.0 bits (66), Expect = 8.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 683 HSTSGKKRRYGRAYKDKEGFQPLTQEDDGNDDGNSDPETEEYATPRGHP 829
+S KKR+ +DK+ + D +DD D E+ ATPRG P
Sbjct: 226 YSLDSKKRKV----EDKDSMSRYDSDGDKSDDLVVDVSNEDPATPRGSP 270
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,173,343
Number of Sequences: 369166
Number of extensions: 1288327
Number of successful extensions: 3438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3401
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)