Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G15
(135 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54639|CYSP4_DICDI Cysteine proteinase 4 precursor 36 0.024
sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precu... 36 0.024
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 35 0.041
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 35 0.041
sp|Q10991|CATL_SHEEP Cathepsin L [Contains: Cathepsin L hea... 35 0.041
sp||P09648_2 [Segment 2 of 2] Cathepsin L [Contains: Cathep... 35 0.053
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 34 0.091
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 34 0.091
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 33 0.20
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 33 0.20
>sp|P54639|CYSP4_DICDI Cysteine proteinase 4 precursor
Length = 442
Score = 36.2 bits (82), Expect = 0.024
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYP 55
MSKD NN CGIATMAS+P
Sbjct: 420 MSKDRNNNCGIATMASFP 437
>sp|P25782|CYSP2_HOMAM Digestive cysteine proteinase 2 precursor
Length = 323
Score = 36.2 bits (82), Expect = 0.024
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
MS++ NN CGIAT+ASYPLV
Sbjct: 304 MSRNRNNNCGIATVASYPLV 323
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 35.4 bits (80), Expect = 0.041
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+KD NN CGIAT ASYP V
Sbjct: 314 MAKDQNNHCGIATAASYPTV 333
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 35.4 bits (80), Expect = 0.041
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+KD NN CGIAT ASYP V
Sbjct: 315 MAKDQNNHCGIATAASYPTV 334
>sp|Q10991|CATL_SHEEP Cathepsin L [Contains: Cathepsin L heavy chain; Cathepsin L light
chain]
Length = 217
Score = 35.4 bits (80), Expect = 0.041
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+KD NN CGIAT ASYP V
Sbjct: 198 MAKDQNNHCGIATAASYPTV 217
>sp||P09648_2 [Segment 2 of 2] Cathepsin L [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 42
Score = 35.0 bits (79), Expect = 0.053
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+KD N CGIAT ASYPLV
Sbjct: 23 MAKDRKNHCGIATAASYPLV 42
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 34.3 bits (77), Expect = 0.091
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+KD NN CGI+T ASYP V
Sbjct: 315 MAKDQNNHCGISTAASYPTV 334
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 34.3 bits (77), Expect = 0.091
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
++KD NN CG+AT ASYP+V
Sbjct: 314 IAKDRNNHCGLATAASYPIV 333
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 33.1 bits (74), Expect = 0.20
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
M+++ NNQCGIAT +SYP V
Sbjct: 320 MARNQNNQCGIATASSYPTV 339
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2
Query: 2 MSKDANNQCGIATMASYPLV 61
++KD NN CGIAT ASYP V
Sbjct: 315 IAKDKNNHCGIATAASYPNV 334
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,781,639
Number of Sequences: 369166
Number of extensions: 124878
Number of successful extensions: 257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)