Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G13
(491 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67246|YB86_AQUAE Hypothetical protein AQ_1186 36 0.056
sp|Q8PNY6|TAL_XANAC Transaldolase 32 0.62
sp|P57235|SYGB_BUCAI Glycyl-tRNA synthetase beta chain (Gly... 32 1.1
sp|P40187|PIG2_YEAST GSY2 interacting protein PIG2 31 1.4
sp|Q805F6|DISB_AGKCO Zinc metalloproteinase acostatin-beta ... 31 1.4
sp|Q8PCA4|TAL_XANCP Transaldolase 31 1.8
sp|P36783|VE2_HPV14 Regulatory protein E2 30 4.0
sp|P50767|VE2_HPV21 Regulatory protein E2 30 4.0
sp|Q01056|TEGU_SHV21 Probable large tegument protein 30 4.0
sp|Q805F4|DISB_AGKPI Zinc metalloproteinase piscivostatin-b... 29 5.2
>sp|O67246|YB86_AQUAE Hypothetical protein AQ_1186
Length = 406
Score = 35.8 bits (81), Expect = 0.056
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 30/170 (17%)
Frame = +1
Query: 34 FIKYATKLFQEKD----------EFKMISHANYLMELEELRTKSPKSCFANHTNKVYRPK 183
F++ ++F KD EF + N++ ELE++ + K NKV+
Sbjct: 31 FLQIFEEIFNAKDGNLFAGKNAKEFAQNFNVNFVPELEKILESNEKLNDTFSNNKVFIEG 90
Query: 184 SKKTIPLLPRQRSVFKKYNSNLSPISV---------------FSMKSGLQ-----TQTVS 303
+KK FK+ N+ L I F K+ +Q TQT S
Sbjct: 91 AKK---------ESFKRLNNPLPEILTFLNQFLKIFQNREVNFIKKTNIQNTRTTTQTTS 141
Query: 304 DENDADQLELNGKDLDNLYKTAEDFIQSQFEKWNTFPNHRFSKKKFTFST 453
D + L K+L NL K E F + QF + N + K FST
Sbjct: 142 DSEKGNLNILFTKNLQNLKKALEAFEEIQFNEGN---KEKIDKPLKLFST 188
>sp|Q8PNY6|TAL_XANAC Transaldolase
Length = 322
Score = 32.3 bits (72), Expect = 0.62
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +1
Query: 205 LPRQRSVFKKYNSNLSPISVFSMKSGLQTQTVSDENDADQLELNGKDLDNLYKTAED 375
LPR+ S + N+ +PI S SGL ++ E A ++ KDL L KT D
Sbjct: 262 LPRKLSPAQADNAQFTPIDSDSFASGLAADPMATEKLAGGIDTFAKDLHALRKTIAD 318
>sp|P57235|SYGB_BUCAI Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)
(GlyRS)
Length = 690
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 85 ISHANYLMELEELRTKSPKSCFANHTNKVYRPKSKKTIPLLPRQRSVFKKYNSNLSPISV 264
I N L+E +SPK+ N K + K I + +++ F YNS +
Sbjct: 241 IKKNNVLIEEVTALVESPKALLVNFQEKFLQIPKKILINTIEKKQKCFPIYNSEKKLLPY 300
Query: 265 FSMKSGLQTQ 294
F S +QTQ
Sbjct: 301 FIFISNIQTQ 310
>sp|P40187|PIG2_YEAST GSY2 interacting protein PIG2
Length = 538
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 49 TKLFQEKDEFKMISHANYLMELEELRTKSPKSC-FANHTNKVYRPKSKKTIPLLPRQRSV 225
+KL +E+DE +SH N+ E EE SP + K + K++P+ P +S+
Sbjct: 113 SKLGEEEDEISPLSHDNFQYESEENGNPSPPIYKKSGELVKSSLKRRSKSLPITP--KSI 170
Query: 226 FKKYNSNLSPISV 264
F K S +++
Sbjct: 171 FNKTGSKSKHVNL 183
>sp|Q805F6|DISB_AGKCO Zinc metalloproteinase acostatin-beta precursor [Contains:
Disintegrin acostatin-beta]
Length = 483
Score = 31.2 bits (69), Expect = 1.4
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Frame = +1
Query: 88 SHANYLMELEELRTKSPKSCFANHTN-KVYRP-KSKKTIPLLPRQRS------------- 222
+HA Y E E ++PK C TN K +P K + L P Q+
Sbjct: 148 AHAVYKYENVEKEDEAPKMCGVTQTNWKSDKPIKKASQLNLTPEQQGFPQRYIELVVVAD 207
Query: 223 --VFKKYNSNLSPISVF 267
+F KYNSNL+ I ++
Sbjct: 208 HRMFTKYNSNLNTIRIW 224
>sp|Q8PCA4|TAL_XANCP Transaldolase
Length = 322
Score = 30.8 bits (68), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 205 LPRQRSVFKKYNSNLSPISVFSMKSGLQTQTVSDENDADQLELNGKDLDNLYKTAED 375
LPR+ S N+ ++PI+ S + L ++ E A ++ KDL+ L KT D
Sbjct: 262 LPRKLSPLNADNAAITPINSDSFATDLAADDMATEKLASGIDTFAKDLEALRKTIAD 318
>sp|P36783|VE2_HPV14 Regulatory protein E2
Length = 483
Score = 29.6 bits (65), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 307 ENDADQLELNGKDLDNLYKTAEDFIQSQFEKWNT 408
EN +D+ L N+Y+TA + ++SQ E W T
Sbjct: 2 ENLSDRFNALQDQLMNIYETAANTLESQIEHWQT 35
>sp|P50767|VE2_HPV21 Regulatory protein E2
Length = 503
Score = 29.6 bits (65), Expect = 4.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 307 ENDADQLELNGKDLDNLYKTAEDFIQSQFEKWNT 408
EN +D+ + L N+Y++A + I+SQ E W T
Sbjct: 2 ENLSDRFNVLQDQLMNIYESAANTIESQIEHWQT 35
>sp|Q01056|TEGU_SHV21 Probable large tegument protein
Length = 2469
Score = 29.6 bits (65), Expect = 4.0
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 235 YNSNLSPISVFSMKSGLQTQTVSDENDADQLELNGKDLDNLYKTAEDFIQSQFEK 399
YN++++ I++ + + Q + V + AD+L KDL NL T E I+ F +
Sbjct: 2114 YNNHINNINLTNNSTYHQYKDVLPQPLADKLSYEPKDLQNLASTTEPQIEDIFSE 2168
>sp|Q805F4|DISB_AGKPI Zinc metalloproteinase piscivostatin-beta precursor [Contains:
Disintegrin piscivostatin-beta]
Length = 483
Score = 29.3 bits (64), Expect = 5.2
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Frame = +1
Query: 88 SHANYLMELEELRTKSPKSCFANHTN-KVYRP-KSKKTIPLLPRQR-------------- 219
+HA Y E E ++PK C TN K +P K + L P Q+
Sbjct: 148 AHAVYKYENVEKEDEAPKMCGVTQTNWKSDKPIKKASQLNLTPEQQRFPQRYIELVVVAD 207
Query: 220 -SVFKKYNSNLSPISVF 267
+F KYN NL+ I ++
Sbjct: 208 HRMFTKYNGNLNTIRIW 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,679,083
Number of Sequences: 369166
Number of extensions: 791182
Number of successful extensions: 2407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2402
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)