Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G12
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42357|HUTH_HUMAN Histidine ammonia-lyase (Histidase) 419 e-117
sp|P35492|HUTH_MOUSE Histidine ammonia-lyase (Histidase) 418 e-116
sp|P21213|HUTH_RAT Histidine ammonia-lyase (Histidase) 415 e-116
sp|Q20502|HUTH_CAEEL Probable histidine ammonia-lyase (Hist... 384 e-106
sp|Q7NCB3|HUTH_GLOVI Histidine ammonia-lyase (Histidase) 275 2e-73
sp|Q73Q56|HUTH_TREDE Histidine ammonia-lyase (Histidase) 271 2e-72
sp|Q93TX3|HUTH_STIAU Histidine ammonia-lyase (Histidase) 270 3e-72
sp|Q8RBH4|HUTH_THETN Histidine ammonia-lyase (Histidase) 270 4e-72
sp|Q63SH6|HUTH_BURPS Histidine ammonia-lyase (Histidase) 267 3e-71
sp|Q62LJ6|HUTH_BURMA Histidine ammonia-lyase (Histidase) 267 3e-71
>sp|P42357|HUTH_HUMAN Histidine ammonia-lyase (Histidase)
Length = 657
Score = 419 bits (1076), Expect = e-117
Identities = 200/286 (69%), Positives = 244/286 (85%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
+I+ FN +P++P KG+VGASGDLAPL+HLALGL+GEG++WSPK+GW D+K+ L A GL
Sbjct: 233 VIEMFNASCLPYVPEKGTVGASGDLAPLSHLALGLVGEGKMWSPKSGWADAKYVLEAHGL 292
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
P+ LK KEGL LINGTQ ITS+G EA+ RAS IARQAD++AALTLEVLKGTT+AFDT I
Sbjct: 293 KPVILKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDI 352
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
H +RPH GQ++VA ++LL + +PSEI+ESHRFC +VQDAYTLRCCPQVHG+V DT+
Sbjct: 353 HALRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIA 412
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
FV+ +ITTE+NS+TDNP+VF + G +S GNFHGEYPAKALD+LAIGIHELA++SERRIE
Sbjct: 413 FVKNIITTELNSATDNPMVFANRGETVSGGNFHGEYPAKALDYLAIGIHELAAISERRIE 472
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RL NP+ S LPAFLV +GG+NSGFM+AH TAAALVSENK L HPSS
Sbjct: 473 RLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSS 518
>sp|P35492|HUTH_MOUSE Histidine ammonia-lyase (Histidase)
Length = 657
Score = 418 bits (1074), Expect = e-116
Identities = 201/286 (70%), Positives = 243/286 (84%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
+I+AFN + ++P KG+VGASGDLAPL+HLALGL+GEG++WSPK+GW D+K+ L A GL
Sbjct: 233 VIEAFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLEAHGL 292
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
P+ LK KEGL LINGTQ ITS+G EAL RAS IARQAD++AALTLEVLKGTT+AFDT I
Sbjct: 293 KPIVLKPKEGLALINGTQMITSLGCEALERASAIARQADIVAALTLEVLKGTTKAFDTDI 352
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
H VRPH GQ++VA ++LL + +PSEI+ESHRFC +VQDAYTLRCCPQVHG+V DT+
Sbjct: 353 HAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIA 412
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
FV+ +ITTE+NS+TDNP+VF G IS GNFHGEYPAKALD+LAIG+HELA++SERRIE
Sbjct: 413 FVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIE 472
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RL NP+ S LPAFLV +GG+NSGFM+AH TAAALVSE+K L HPSS
Sbjct: 473 RLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSESKALCHPSS 518
>sp|P21213|HUTH_RAT Histidine ammonia-lyase (Histidase)
Length = 657
Score = 415 bits (1067), Expect = e-116
Identities = 199/286 (69%), Positives = 242/286 (84%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
+I+ FN + ++P KG+VGASGDLAPL+HLALGL+GEG++WSPK+GW D+K+ L A GL
Sbjct: 233 VIEVFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLEAHGL 292
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
P+ LK KEGL LINGTQ ITS+G EA+ RAS IARQAD++AALTLEVLKGTT+AFDT I
Sbjct: 293 KPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDI 352
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
H VRPH GQ++VA ++LL + +PSEI+ESHRFC +VQDAYTLRCCPQVHG+V DT+
Sbjct: 353 HAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIA 412
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
FV+ +ITTE+NS+TDNP+VF G IS GNFHGEYPAKALD+LAIG+HELA++SERRIE
Sbjct: 413 FVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIE 472
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RL NP+ S LPAFLV +GG+NSGFM+AH TAAALVSE+K L HPSS
Sbjct: 473 RLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSESKALCHPSS 518
>sp|Q20502|HUTH_CAEEL Probable histidine ammonia-lyase (Histidase)
Length = 677
Score = 384 bits (987), Expect = e-106
Identities = 193/286 (67%), Positives = 224/286 (78%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
+I AFN V ++P +G+VG SGDL PLAHLALGL+GEG++WSP TGW + L L
Sbjct: 249 MIAAFNAFCVSYVPQQGTVGCSGDLCPLAHLALGLLGEGKMWSPTTGWQPADVVLKKNNL 308
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
PL+L KEGL LINGTQ +T++GA L RA NIARQADVIAAL+L+VLKGTTRA+D I
Sbjct: 309 EPLELGPKEGLALINGTQMVTALGAYTLERAHNIARQADVIAALSLDVLKGTTRAYDPDI 368
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
H +RPH GQ A L+ALLH+ PS+I+ESHR CTKVQDAYTLRC PQVHG+V DT++
Sbjct: 369 HRIRPHRGQNLSALRLRALLHSEANPSQIAESHRNCTKVQDAYTLRCVPQVHGVVHDTIE 428
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
FVR +ITTEMNS+TDNPLVF D IIS GNFHGEYPAKALDFLAI + ELA MSERR+E
Sbjct: 429 FVREIITTEMNSATDNPLVFADREEIISGGNFHGEYPAKALDFLAIAVAELAQMSERRLE 488
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RLVN SGLP FL DGG+NSGFM + AA+LVSENKVL HPSS
Sbjct: 489 RLVNKELSGLPTFLTPDGGLNSGFMTVQLCAASLVSENKVLCHPSS 534
>sp|Q7NCB3|HUTH_GLOVI Histidine ammonia-lyase (Histidase)
Length = 514
Score = 275 bits (702), Expect = 2e-73
Identities = 151/288 (52%), Positives = 192/288 (66%), Gaps = 3/288 (1%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWT--DSKHALAAC 176
L+ N GV P +P +GSVGASGDLAPLAHLAL L GEG + G ALA
Sbjct: 127 LVAMLNRGVHPVVPCRGSVGASGDLAPLAHLALVLTGEGEA---EVGGEVLPGAAALARA 183
Query: 177 GLSPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDT 356
GL P++L AKEGL LINGTQ ++++GA + RA +A+ AD+ A+TLE G+ AF
Sbjct: 184 GLEPIRLGAKEGLALINGTQAMSALGALTVHRAQRLAKLADLACAMTLEATLGSRSAFLP 243
Query: 357 VIHEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDT 536
H +RPH GQ AR+L L +S + SH C +VQDAY+LRC PQVHG LD
Sbjct: 244 HFHRLRPHPGQQSSARNLLVLTEDSA----LIASHAGCDRVQDAYSLRCAPQVHGASLDA 299
Query: 537 LDFVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERR 716
+ + GVI E+NS TDNPL+F D+G +++ G+FHG+ A A D LAI + ELA +SERR
Sbjct: 300 ISYAAGVIAIEINSVTDNPLIFADTGQVVTGGHFHGQPVAMASDVLAIALAELADISERR 359
Query: 717 IERLVNPAYS-GLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPS 857
ERLVN YS GLP FL + GG++SG+M+A TAA+LVSENKVL HP+
Sbjct: 360 TERLVNADYSNGLPMFLTEAGGLHSGYMVAQYTAASLVSENKVLAHPA 407
>sp|Q73Q56|HUTH_TREDE Histidine ammonia-lyase (Histidase)
Length = 507
Score = 271 bits (693), Expect = 2e-72
Identities = 147/287 (51%), Positives = 195/287 (67%), Gaps = 1/287 (0%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
L+D N GV+P++P KGS+GASGDLA LAH+AL ++GEG+ + + + K ALA GL
Sbjct: 125 LVDMLNKGVIPYVPEKGSLGASGDLANLAHIALVMIGEGKAYY-EGKLMEGKAALAKAGL 183
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
P+ L K+GL +INGT ++ IGA AL A + + A++ A+L E +G T A D I
Sbjct: 184 KPVVLSGKDGLGIINGTPVMSGIGALALHDAEQLLKAANMGASLVFEAFRGITAALDPRI 243
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
H+ RPH GQ+ A + +L S S I+ VQD YTLRC PQVHG D +
Sbjct: 244 HKSRPHKGQIDTAAFILKMLKGS---SSINTREN---DVQDPYTLRCVPQVHGASADAIA 297
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
+VR V+ E+N+ TDNPLVFPD+ +IS GNFHG+ A +DFL I + ELA++SERRIE
Sbjct: 298 YVRKVLEIEINAVTDNPLVFPDNHDVISGGNFHGQPIAITMDFLGIAVSELANISERRIE 357
Query: 723 RLVNPAYS-GLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RLVNP + GLPAFL+++GG+NSGFM+ TAA+LVSENKVL HP+S
Sbjct: 358 RLVNPQLNGGLPAFLIENGGVNSGFMIPQYTAASLVSENKVLAHPAS 404
>sp|Q93TX3|HUTH_STIAU Histidine ammonia-lyase (Histidase)
Length = 510
Score = 270 bits (691), Expect = 3e-72
Identities = 145/285 (50%), Positives = 196/285 (68%)
Frame = +3
Query: 6 IDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGLS 185
++ N VVP +P +GSVGASGDLAPLAHLAL +GEG + K + AL GL
Sbjct: 126 LEMLNRDVVPVVPERGSVGASGDLAPLAHLALVFIGEGEAFY-KGERLPAAQALERAGLK 184
Query: 186 PLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVIH 365
P+ L+AKEGL L+NGTQ + ++G RA +A AD+ A+TLE L G+ + F I
Sbjct: 185 PVVLEAKEGLALVNGTQAMCAVGTLLQLRAEMLADLADLAGAMTLEGLLGSHKPFIPEIQ 244
Query: 366 EVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLDF 545
+VR H GQ A HL+ LL +S + ESH C+KVQD Y+LRC PQVHG + L F
Sbjct: 245 DVRAHEGQKACAAHLRELLADSA----LVESHVNCSKVQDPYSLRCMPQVHGAAREGLSF 300
Query: 546 VRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIER 725
R ++ E+NS+TDNPLVF ++ I+S GNFHG+ + ALD A+ + +L+++SERR+E+
Sbjct: 301 ARRILEVEINSATDNPLVFVETERIVSGGNFHGQPVSLALDVAAMALTQLSAISERRVEQ 360
Query: 726 LVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
LVNPA SGLP FL K+ G+NSGFM+A VT+AALV+E++VL+HP+S
Sbjct: 361 LVNPALSGLPPFLAKNSGLNSGFMIAQVTSAALVAESRVLSHPAS 405
>sp|Q8RBH4|HUTH_THETN Histidine ammonia-lyase (Histidase)
Length = 508
Score = 270 bits (690), Expect = 4e-72
Identities = 141/286 (49%), Positives = 193/286 (67%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
LI+ N VVP IP KGS+GASGDLAPLAH+ L ++G G + + A+ G+
Sbjct: 123 LIEMINKNVVPVIPEKGSLGASGDLAPLAHMVLVMIGRGEAFYAGER-VSGEEAMRRAGI 181
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
+ L +KEGL LINGTQ ++++G + A I AD +A++TLE L+G AFD +
Sbjct: 182 PTITLSSKEGLALINGTQVMSALGCLNVYDAKRIIAVADAVASITLEALRGIIDAFDDRV 241
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
VRPH GQ+ A++++ ++ S+ + E +VQDAYTLRC PQVHG V D +
Sbjct: 242 QMVRPHKGQIVSAKNVRKMVEGSELITRQGE-----IRVQDAYTLRCIPQVHGAVRDAIS 296
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
++ V+ E+NS+TDNPL+FPD G +IS GNFHGE A A+DFL+I + E+A++SERRIE
Sbjct: 297 YIERVLGVEINSATDNPLIFPDDGEVISGGNFHGEPVALAMDFLSIALSEIANISERRIE 356
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
RLVN + LP FL + GG+NSG M+A TAA+LVSENKVL+HP+S
Sbjct: 357 RLVNYQLNDLPPFLTEKGGLNSGMMIAQYTAASLVSENKVLSHPAS 402
>sp|Q63SH6|HUTH_BURPS Histidine ammonia-lyase (Histidase)
Length = 507
Score = 267 bits (682), Expect = 3e-71
Identities = 144/286 (50%), Positives = 189/286 (66%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
L+ FN V+P IP+KGSVGASGDLAPLAH++ L+G G V+ + + L GL
Sbjct: 121 LVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLGIGDVFI-RGERASAAEGLRVAGL 179
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
+PL L+AKEGL L+NGTQ T++ + L ++ R A V AL+++ G+ + FD I
Sbjct: 180 APLTLEAKEGLALLNGTQASTALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARI 239
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
HE+R H GQ+ A ++LL S I+ SHR C KVQD Y+LRC PQV G LD +
Sbjct: 240 HELRGHRGQIDAAAAYRSLLDGSA----INVSHRDCDKVQDPYSLRCQPQVMGACLDQIR 295
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
GV+ E N+ +DNPL+FPD+G ++S GNFH E A A D LAI E+ +++ERRI
Sbjct: 296 HAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIA 355
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
L++ SGLP FLVKDGG+NSGFM+AHVTAAAL SENK L HP+S
Sbjct: 356 LLIDATLSGLPPFLVKDGGVNSGFMIAHVTAAALASENKTLAHPAS 401
>sp|Q62LJ6|HUTH_BURMA Histidine ammonia-lyase (Histidase)
Length = 507
Score = 267 bits (682), Expect = 3e-71
Identities = 144/286 (50%), Positives = 189/286 (66%)
Frame = +3
Query: 3 LIDAFNVGVVPWIPLKGSVGASGDLAPLAHLALGLMGEGRVWSPKTGWTDSKHALAACGL 182
L+ FN V+P IP+KGSVGASGDLAPLAH++ L+G G V+ + + L GL
Sbjct: 121 LVTLFNADVLPLIPVKGSVGASGDLAPLAHMSAVLLGIGDVFI-RGERASAAEGLRVAGL 179
Query: 183 SPLKLKAKEGLCLINGTQFITSIGAEALSRASNIARQADVIAALTLEVLKGTTRAFDTVI 362
+PL L+AKEGL L+NGTQ T++ + L ++ R A V AL+++ G+ + FD I
Sbjct: 180 APLTLEAKEGLALLNGTQASTALALDNLFAIEDLYRTALVSGALSVDAAAGSVKPFDARI 239
Query: 363 HEVRPHSGQMKVARHLQALLHNSKYPSEISESHRFCTKVQDAYTLRCCPQVHGIVLDTLD 542
HE+R H GQ+ A ++LL S I+ SHR C KVQD Y+LRC PQV G LD +
Sbjct: 240 HELRGHRGQIDAAAAYRSLLDGSA----INVSHRDCDKVQDPYSLRCQPQVMGACLDQIR 295
Query: 543 FVRGVITTEMNSSTDNPLVFPDSGMIISAGNFHGEYPAKALDFLAIGIHELASMSERRIE 722
GV+ E N+ +DNPL+FPD+G ++S GNFH E A A D LAI E+ +++ERRI
Sbjct: 296 HAAGVLLIEANAVSDNPLIFPDTGEVLSGGNFHAEPVAFAADNLAIAAAEIGALAERRIA 355
Query: 723 RLVNPAYSGLPAFLVKDGGINSGFMLAHVTAAALVSENKVLTHPSS 860
L++ SGLP FLVKDGG+NSGFM+AHVTAAAL SENK L HP+S
Sbjct: 356 LLIDATLSGLPPFLVKDGGVNSGFMIAHVTAAALASENKTLAHPAS 401
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,341,296
Number of Sequences: 369166
Number of extensions: 2144081
Number of successful extensions: 6186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5891
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)