Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G10
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15091|Y391_HUMAN Hypothetical protein KIAA0391 42 0.002
sp|O14343|KLP5_SCHPO Kinesin-like protein 5 38 0.032
sp|Q10303|ALP21_SCHPO Cell polarity protein alp21 (Altered ... 34 0.46
sp|O51068|Y039_BORBU Hypothetical protein BB0039 34 0.61
sp|Q8CIB9|ESCO2_MOUSE N-acetyltransferase ESCO2 (Establishm... 33 0.79
sp|Q49VB6|NAGB_STAS1 Glucosamine-6-phosphate deaminase (Glu... 33 0.79
sp|P32492|MYO4_YEAST Myosin-4 isoform 33 1.0
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 33 1.4
sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF... 33 1.4
sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein (P1) [Contains: P1A p... 33 1.4
>sp|O15091|Y391_HUMAN Hypothetical protein KIAA0391
Length = 567
Score = 42.0 bits (97), Expect = 0.002
Identities = 30/106 (28%), Positives = 54/106 (50%)
Frame = +2
Query: 467 VKKSVKNLKCVNCNSHLPEIQFPNETCYKLADILMDDVLNIKSIDKLYRSSTPEEIEKFF 646
+K ++ +C C + IQ E L +M DV++ YR +TP+E+++F
Sbjct: 323 IKTWFESGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGD---QYRKTTPQELKRFE 379
Query: 647 SFFNKCKLPFDCILDLPNVIGLLPPKIRNNYIDSHITTVLKTLLLR 784
+F K + PFD ++D NV + PK+R + + ++ + L LR
Sbjct: 380 NFI-KSRPPFDVVIDGLNVAKMF-PKVRESQLLLNVVSQLAKRNLR 423
>sp|O14343|KLP5_SCHPO Kinesin-like protein 5
Length = 883
Score = 38.1 bits (87), Expect = 0.032
Identities = 34/171 (19%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Frame = +2
Query: 38 FDNNKNYTNNFIDLYEKIVPENVYDSMFSNYVKILLRTESRIKALNLLSKRTMNQDFLSS 217
FD++ ++ YE+I+P + + +F L+R+ K +LL++R + ++
Sbjct: 484 FDDSIRVLKYWLSCYERILPNSADERVF------LVRS----KLESLLTRRA---EIIAD 530
Query: 218 IITTSPNSETWNDIKHYVDEYLSTDETAFKEI--EDIILSKIINEKSI-----------P 358
I + + H ++ Y T + ++ +++ L K I E + P
Sbjct: 531 IDPELVYQKFQRSVSHIINTYKQEGATMYADVLQDEVDLLKSIIENQVLDAQNKVDEFTP 590
Query: 359 VFQSILKSLYKKNVFLKLGNLEQ---------IQLTFKDHPNVQIVKKSVK 484
V +S+L+S +K + LK G +++ + + + PN+ ++ +S K
Sbjct: 591 VLESLLRSSFKASSLLKEGGMQELFSILEKWLLGIGLGEKPNISVLSESYK 641
>sp|Q10303|ALP21_SCHPO Cell polarity protein alp21 (Altered polarity protein 21)
(Suppressor of tsm one protein 1)
Length = 511
Score = 34.3 bits (77), Expect = 0.46
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 16/238 (6%)
Frame = +2
Query: 80 YEKIVPE----NVYDSMFSNYVKILLRTESRIKALNLLSKRTMNQDFLSS--------II 223
Y KI+PE ++ ++F + IL NL + +F+SS +
Sbjct: 136 YSKILPEVIDLDLSRNLFHEFFPILKLCSQLPSLRNLTLDSNLFSNFISSNTVLLIPHLT 195
Query: 224 TTSPNSETWN--DIKHYVDEYLSTDETAFKEIEDIILSKIINEKSIPVFQSILKSLYKKN 397
S N N D++ ++ E + E + E +IILSK + K++ Q+
Sbjct: 196 QLSVNGCGLNSKDVQ-WITETFPSLEVLYLEANEIILSKATSFKNLQFLQT--------- 245
Query: 398 VFLKLGNLEQIQLTFKDHPNVQIVKKSVKNLKCVNCNSHLPEIQFPNETCYKLA--DILM 571
L L N + L D V + + + NL ++ S + P T +KL DI
Sbjct: 246 --LSLAN--NLNLYSADGYAVDVFQ-GINNLN-LSSTSLADVAELPVHTLHKLTFLDISE 299
Query: 572 DDVLNIKSIDKLYRSSTPEEIEKFFSFFNKCKLPFDCILDLPNVIGLLPPKIRNNYID 745
+++ +I+S+D L + + S+FNK P D L VI +P ++ N ++
Sbjct: 300 NNIRDIRSLDHLRTLENLKHLRITLSYFNK---PTDIAKLL--VIARIPSLVKLNDVN 352
>sp|O51068|Y039_BORBU Hypothetical protein BB0039
Length = 500
Score = 33.9 bits (76), Expect = 0.61
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 30/215 (13%)
Frame = +2
Query: 56 YTNNFIDLYEKI--------VPENVYDSMFSNYVKILLRTESRIKALNLLSKRTMNQDFL 211
Y N + +LY ++ N + F YV+ + + K +SK +N++ L
Sbjct: 76 YVNYYSNLYSRLQGNAKNINTDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 212 SS--IITTSPN--SETWNDIKHYVDEYLSTDETAFKEIEDIILSKI-INEKSIPVFQSIL 376
S + +S N S+ +N Y + D +E+I+ S + I S +F L
Sbjct: 136 KSPEYLDSSGNFSSKRYNKASDYQKVKIYDDM-----VENILFSNVKIFLNSNLIFPDSL 190
Query: 377 KSLYKKNVFLKLGNLEQIQLTFKDHPNVQIVKKSVKNLKCVNCNSHLPEIQFPN----ET 544
+ K N+ ++ + L+++D N +++ + KNL S L I+F N T
Sbjct: 191 FDMIK-NMSTVERHISYLSLSYQDFSNKEVISYAEKNLNLFKRLS-LASIRFKNMNDART 248
Query: 545 CY----------KLADILMDDVLNIK---SIDKLY 610
+ +LA + DD+ N K S+DK Y
Sbjct: 249 AHDKLLNKTPFEELAKLYSDDIANFKGVVSLDKYY 283
>sp|Q8CIB9|ESCO2_MOUSE N-acetyltransferase ESCO2 (Establishment of cohesion 1 homolog 2)
(ECO1 homolog 2)
Length = 592
Score = 33.5 bits (75), Expect = 0.79
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +2
Query: 305 KEIEDIILSKIINEKSIPVFQSILKSLYKKNVFLKLGNLEQIQLTFKDHPNVQIVKKSVK 484
+E I L+ +K IP S+ +++ +K V K +Q LT K PN + +K +
Sbjct: 113 RECRSICLATESGDKPIP---SVTENIQRKPVCTKKNKKKQKSLTAKYQPNYKHIKSKSR 169
Query: 485 NLKCVNCNSHLPEIQFPNETCYK 553
NLK NS PN+ YK
Sbjct: 170 NLK----NSK------PNQVTYK 182
>sp|Q49VB6|NAGB_STAS1 Glucosamine-6-phosphate deaminase (Glucosamine-6-phosphate
isomerase) (GNPDA) (GlcN6P deaminase)
Length = 242
Score = 33.5 bits (75), Expect = 0.79
Identities = 18/81 (22%), Positives = 41/81 (50%)
Frame = +2
Query: 14 ILSILNTTFDNNKNYTNNFIDLYEKIVPENVYDSMFSNYVKILLRTESRIKALNLLSKRT 193
I+ + +T N Y +N +D+ ++ V + + ++ + +L E + A+ L++
Sbjct: 155 IVDLTESTISANSRYFDNEVDVPKQAVSMGLSTILKAHRIILLAFGEKKRAAIEKLAENE 214
Query: 194 MNQDFLSSIITTSPNSETWND 256
+N D ++I+ PN E + D
Sbjct: 215 VNSDVPATILHAHPNVEIYVD 235
>sp|P32492|MYO4_YEAST Myosin-4 isoform
Length = 1471
Score = 33.1 bits (74), Expect = 1.0
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Frame = +2
Query: 149 TESRIKALNLLSKRTMNQDFLSSIITTSPNSETWNDI----KHYVDEYLSTDETAFKEI- 313
TE +K +N+ N +ITT +S N + ++ + L T E+ +
Sbjct: 1119 TEGYLKKVNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 1178
Query: 314 -EDIILSKII---NEKSIPVFQSILKSLYKKNVFLKLGNLEQIQLTFKDHPNVQIVKKS- 478
++ +L I N +P F + K+LY+ N + L I L ++ +++ K
Sbjct: 1179 KDETMLGGIFWLSNLSRLPAFAANQKTLYEANGGDEKDKLTLIYLNDLENETLKVFDKIY 1238
Query: 479 ----VKNLKCVNCNSHLPEIQFPNETCYKLADILMDDVLNIKSIDKLYRSSTPEEIEKFF 646
VK +K + ++H+ + D VLN +KL+++S E+ K F
Sbjct: 1239 STWLVKFMK--HASAHIE---------------IFDMVLN----EKLFKNSGDEKFAKLF 1277
Query: 647 SFFNKCKLPFDCILDLPNVIGLLPPKIRNNYIDSHITTVLKTLLLRKP 790
+F N+ FD +L V+ + KI N+ + + L+ + P
Sbjct: 1278 TFLNE----FDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCP 1321
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 32.7 bits (73), Expect = 1.4
Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Frame = +2
Query: 35 TFDNNKNYTNNFIDLYEKIVPENVYDSMFSNYVKILLRTESRIKALNLLSKRTMNQDFLS 214
++++ N+ YEK++ E +YDS F+N + + + K + ++ + + +
Sbjct: 473 SYEDRSKSLNDITKEYEKLLNE-IYDSKFNNNIDLTNFEKMMGKRYSYKVEKLTHHNTFA 531
Query: 215 SIITTSPNSETWNDIKHYVDEYLSTDETAFKEIE--DIILSKIINEKSIPVFQSILK--- 379
S + N E Y+++Y + KE++ ++SKI NE V ++I K
Sbjct: 532 SYENSKHNLEKLTKALKYMEDYSLRNIVVEKELKYYKNLISKIENEIETLV-ENIKKDEE 590
Query: 380 SLYKKNVFLKLGNLEQIQLTFKDHPNVQIVKKSVKN 487
L++K + ++ L D VQ+ K + N
Sbjct: 591 QLFEKKITKDENKPDEKILEVSDIVKVQVQKVLLMN 626
Score = 32.7 bits (73), Expect = 1.4
Identities = 55/270 (20%), Positives = 108/270 (40%), Gaps = 8/270 (2%)
Frame = +2
Query: 17 LSILNTTFDN-NKNYTNNFIDLYEKIVPENVYDSMFSNYVKILLRTESRIKALNLLSKRT 193
+ ++ + FD+ N + + F+++YEK + N+Y ++ +K LL ++ S +T
Sbjct: 833 IPVMYSMFDSLNNSLSQLFMEIYEKEMVCNLYKLKDNDKIKNLLEEAKKVST----SVKT 888
Query: 194 MNQDFLSSIITTSPNSETWNDIKHYVDEYLSTDETAFKEIEDIILSKIINEKSIPVFQSI 373
++ + + T + E + D+T+ S +N S+ +F++I
Sbjct: 889 LSSSSMQPLSLTPQDK----------PEVSANDDTSH--------STNLN-NSLKLFENI 929
Query: 374 LKSLYKKNVFLKLGNLEQIQLTFKDHPNVQIVKKSVKNLKCVNCNSHLPEIQFPNETCYK 553
L KN++ +L + + ++ +I+K S F NE+
Sbjct: 930 LSLGKNKNIYQELIGQKSSENFYE-----KILKDS---------------DTFYNESFTN 969
Query: 554 LADILMDDVLNIKSIDKLYRSSTPEEIEKF-------FSFFNKCKLPFDCILDLPNVIGL 712
DD+ ++ D+ R E+I K F +NK KL + + D +G
Sbjct: 970 FVKSKADDINSLN--DESKRKKLEEDINKLKKTLQLSFDLYNKYKLKLERLFDKKKTVGK 1027
Query: 713 LPPKIRNNYIDSHITTVLKTLLLRKPNFKN 802
+I+ T+LK L K N N
Sbjct: 1028 YKMQIKK-------LTLLKEQLESKLNSLN 1050
>sp|P12222|YCF1_TOBAC Hypothetical 226 kDa protein ycf1 (ORF 1901)
Length = 1901
Score = 32.7 bits (73), Expect = 1.4
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Frame = +2
Query: 41 DNNKNYTNNFIDLYEKIVPENVYDSMFSNYVKILLRTESRIKALNLLSKRTMNQDFLSSI 220
D + N TNN I +E P+ ++ + +++ + +K L +R FLS I
Sbjct: 1111 DISPNKTNN-IKKFES--PKKIFQILKRRNTRLIWKFHYFLK---LFIQRLYIDLFLSII 1164
Query: 221 ITTSPNSETW-NDIKHYVDEYLSTDETAFKEIEDIILSKIINEKSIPVFQSILKSLY--- 388
N++ + +D+Y+S +E I KI N+K I +I KSLY
Sbjct: 1165 NIPRINTQLFLESTNKLIDKYISNNE--------INQEKINNQKKIHFISTIKKSLYNIS 1216
Query: 389 KKN--VFLKLGNLEQIQLTFK 445
KKN +F L L Q + +K
Sbjct: 1217 KKNSHIFFDLSYLSQAYVFYK 1237
>sp|Q6W8W5|POL1_ARMVN RNA1 polyprotein (P1) [Contains: P1A protein (1A) (Protease
cofactor); Putative helicase (NTP-binding protein) (NTB)
(1B) (Membrane-binding protein); Viral genome-linked
protein (1C-VPg); Picornain 3C-like protease (3C-like
protease) (1D-PRO); RNA-directed RNA polymerase (1E-POL)]
Length = 2284
Score = 32.7 bits (73), Expect = 1.4
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Frame = +2
Query: 263 HYVDEYLSTDETAFKEIEDIILSKIINEKSIPVFQSILKSLYKKNVFLKLGNLEQIQLTF 442
HY ++L+T++ + INE+ F ++ +YK NV KL E T
Sbjct: 1003 HYPGQWLTTEQKN---------TYGINEEGFS-FLAVDGKMYKYNVLGKLNPCE----TV 1048
Query: 443 KDHPNVQIVKKSVKNLKCVNCNSHLPEIQFPNE---TCYKLADILMDDVLNIKSIDKLYR 613
HPNV I K L V+ ++H P +C+ L+ D ++S+D + +
Sbjct: 1049 PPHPNV-IPWLEEKTLSIVHWDAHKHIATGPRNALVSCFLQG--LVQDQSRVQSVDLMGK 1105
Query: 614 SSTPEEIEKFFS--------FFNKCKLPFDCI 685
S+PE+ + FF + C++ D +
Sbjct: 1106 DSSPEQ-QAFFKRLTLSERIYLRLCQIRIDAV 1136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,556,328
Number of Sequences: 369166
Number of extensions: 1738863
Number of successful extensions: 5215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5208
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)