Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G06
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 210 1e-54
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 209 3e-54
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 209 3e-54
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 207 1e-53
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 200 9e-52
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 191 4e-49
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 181 4e-46
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 179 2e-45
sp|Q8KCM7|SYK_CHLTE Lysyl-tRNA synthetase (Lysine--tRNA lig... 162 4e-40
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA lig... 157 7e-39
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 210 bits (534), Expect = 1e-54
Identities = 95/125 (76%), Positives = 111/125 (88%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LEE C+NPTFI+NHPEIMSPLAKWHR+ PGLTERFELFV K E+CNAYTELNDP+VQR+R
Sbjct: 477 LEETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQR 536
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FE+Q KD+ +GD++AM +DETF A+E G+PPT GWGLGIDRLTM LTD+ NIKEVL FP
Sbjct: 537 FEEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFP 596
Query: 361 AMKPE 375
AMKP+
Sbjct: 597 AMKPQ 601
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 209 bits (531), Expect = 3e-54
Identities = 96/125 (76%), Positives = 112/125 (89%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE CI+PTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+
Sbjct: 450 LEVTCISPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQL 509
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FE+QAK KAAGD++AMF+DE F A+E G+PPTAGWG+GIDRLTMFLTD++NIKEVL FP
Sbjct: 510 FEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFP 569
Query: 361 AMKPE 375
AMKPE
Sbjct: 570 AMKPE 574
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 209 bits (531), Expect = 3e-54
Identities = 96/125 (76%), Positives = 112/125 (89%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE CINPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+
Sbjct: 452 LEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 511
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FE+QAK KAAGD++AMF+DE F A+E G+PPTAGWG+GIDR+TMFLTD++NIKEVL FP
Sbjct: 512 FEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFP 571
Query: 361 AMKPE 375
AMKPE
Sbjct: 572 AMKPE 576
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 207 bits (526), Expect = 1e-53
Identities = 95/125 (76%), Positives = 111/125 (88%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE CINPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CNAYTELNDP+ QR+
Sbjct: 452 LEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 511
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FE+QAK KAAGD++AMF+DE F A+E G+PPTAGWG+GIDR+ MFLTD++NIKEVL FP
Sbjct: 512 FEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 571
Query: 361 AMKPE 375
AMKPE
Sbjct: 572 AMKPE 576
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 200 bits (509), Expect = 9e-52
Identities = 90/130 (69%), Positives = 110/130 (84%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE I+PTF++ HP+IMSPLAKWHR++PGLTERFELF + +E+ NAYTELNDPI QR+R
Sbjct: 432 LESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIANAYTELNDPITQRQR 491
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FEQQAKDK AGD++A +DETF A+E G+PPT GWG+GIDRL+M LTD +NIKEVL FP
Sbjct: 492 FEQQAKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
Query: 361 AMKPEFGIKK 390
AM+PE G +K
Sbjct: 552 AMRPEDGTEK 561
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 191 bits (486), Expect = 4e-49
Identities = 88/124 (70%), Positives = 104/124 (83%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE C+NPTFI+N PEIMSPLAKWHR+ GLTERFELF+ K ELCNAYTELNDP+VQR+R
Sbjct: 486 LEPTCVNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQR 545
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
F Q KD+ +GD++AM +DETF A+E G+ PT GWGLGIDRL+M LTD+ NIKEVL FP
Sbjct: 546 FADQLKDRQSGDDEAMALDETFCNALEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFP 605
Query: 361 AMKP 372
AM+P
Sbjct: 606 AMRP 609
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 181 bits (460), Expect = 4e-46
Identities = 82/125 (65%), Positives = 100/125 (80%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
LE+ CINPTFI HP++MSPLAK+ R+ PGL ERFE+FV KE+CNAYTELNDP QR R
Sbjct: 455 LEDTCINPTFIFGHPQMMSPLAKYSRDQPGLCERFEVFVATKEICNAYTELNDPFDQRAR 514
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
FE+QA+ K GD++A VDETF A+E G+PPT GWG GIDRL MFLTD++ I+EVL FP
Sbjct: 515 FEEQARQKDQGDDEAQLVDETFCNALEYGLPPTGGWGCGIDRLAMFLTDSNTIREVLLFP 574
Query: 361 AMKPE 375
+KP+
Sbjct: 575 TLKPD 579
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 179 bits (454), Expect = 2e-45
Identities = 82/123 (66%), Positives = 102/123 (82%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
+E CINPTFI+NHPEIMSPLAK R+ PGLTERF LFV ++ELC+AYTELNDP QRER
Sbjct: 464 IEVNCINPTFIINHPEIMSPLAKSRRSEPGLTERFNLFVNRRELCDAYTELNDPTAQRER 523
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
F +Q KD+ GD++AM +DE+F+ A+E G+PPT G G+GIDRLTM LTD+ N+KEV+ FP
Sbjct: 524 FAEQLKDRQLGDDEAMDLDESFITALEYGLPPTGGLGMGIDRLTMLLTDSQNVKEVILFP 583
Query: 361 AMK 369
AM+
Sbjct: 584 AMR 586
>sp|Q8KCM7|SYK_CHLTE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 511
Score = 162 bits (409), Expect = 4e-40
Identities = 76/125 (60%), Positives = 98/125 (78%)
Frame = +1
Query: 1 LEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRER 180
+E K I PTFI ++PE MSPLAK HR+ PGL ERFEL V KE+CN+++ELNDP++QRER
Sbjct: 387 VEPKLIQPTFITDYPEEMSPLAKKHRSEPGLVERFELIVGGKEVCNSFSELNDPVIQRER 446
Query: 181 FEQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFP 360
E+QA+ + GD++AM VDE FL A+E GMPP AG G+GIDR+ M LT D+I++V+ FP
Sbjct: 447 LEEQARLRQRGDDEAMIVDEDFLRALEYGMPPCAGLGIGIDRMVMLLTGQDSIRDVIFFP 506
Query: 361 AMKPE 375
MKPE
Sbjct: 507 HMKPE 511
>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 157 bits (398), Expect = 7e-39
Identities = 74/124 (59%), Positives = 95/124 (76%)
Frame = +1
Query: 4 EEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCNAYTELNDPIVQRERF 183
EE I PTF+++ P+I+SPLAK HR P L ERFEL + + E+ NAYTELNDP Q+ERF
Sbjct: 467 EEDLIQPTFVIDFPKILSPLAKTHREDPDLVERFELIIARYEVANAYTELNDPFDQKERF 526
Query: 184 EQQAKDKAAGDEKAMFVDETFLEAMELGMPPTAGWGLGIDRLTMFLTDTDNIKEVLCFPA 363
+Q K+K GDE+AM +DE F+ A+E GMPPTAG G+GIDRL M L +TD+I+EV+ FP
Sbjct: 527 LEQLKEKQMGDEEAMDMDEDFIRALEYGMPPTAGEGIGIDRLVMILANTDSIREVILFPQ 586
Query: 364 MKPE 375
+KPE
Sbjct: 587 LKPE 590
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,510,504
Number of Sequences: 369166
Number of extensions: 1002462
Number of successful extensions: 3009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)