Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F12
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 238 4e-63
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 238 4e-63
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 237 5e-63
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 237 7e-63
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 236 9e-63
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 236 2e-62
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 236 2e-62
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 235 2e-62
sp|P08537|TBA_XENLA Tubulin alpha chain 235 2e-62
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 235 2e-62
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 238 bits (606), Expect = 4e-63
Identities = 116/132 (87%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 238 bits (606), Expect = 4e-63
Identities = 116/132 (87%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 237 bits (605), Expect = 5e-63
Identities = 115/132 (87%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 237 bits (604), Expect = 7e-63
Identities = 114/132 (86%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 236 bits (603), Expect = 9e-63
Identities = 115/132 (87%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEIVD+VLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERP+YTNLNR
Sbjct: 218 DIERPSYTNLNR 229
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 236 bits (601), Expect = 2e-62
Identities = 113/132 (85%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYT+GKE++D+VLDRIRKLADQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 236 bits (601), Expect = 2e-62
Identities = 113/132 (85%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEIVDLVLDR+RKL+DQCTGLQGFLIFH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 235 bits (600), Expect = 2e-62
Identities = 112/132 (84%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 235 bits (600), Expect = 2e-62
Identities = 112/132 (84%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH LL+ERL
Sbjct: 98 DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLLERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 235 bits (600), Expect = 2e-62
Identities = 112/132 (84%), Positives = 119/132 (90%)
Frame = +1
Query: 1 DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 180
DAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH LLMERL
Sbjct: 98 DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERL 157
Query: 181 SVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDNETLYDICRRNL 360
SVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDNE +YDICRRNL
Sbjct: 158 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 217
Query: 361 DIERPTYTNLNR 396
DIERPTYTNLNR
Sbjct: 218 DIERPTYTNLNR 229
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,200,067
Number of Sequences: 369166
Number of extensions: 790814
Number of successful extensions: 2230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2188
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)