Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F05
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex... 161 1e-39
sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex... 161 1e-39
sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex... 161 1e-39
sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex... 161 1e-39
sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex... 161 1e-39
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 161 1e-39
sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex... 159 3e-39
sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex... 159 4e-39
sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex... 158 6e-39
sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex... 157 2e-38
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC) (Hom s 2.02)
Length = 215
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
(Alpha-NAC/1.9.2)
Length = 215
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 214
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 64 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 123
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 124 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 176
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 177 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 106/157 (67%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 161 bits (407), Expect = 1e-39
Identities = 91/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 2037 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 2096
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 2097 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 2149
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 2150 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 159 bits (403), Expect = 3e-39
Identities = 90/157 (57%), Positives = 105/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ V GV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN +ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 213
Score = 159 bits (402), Expect = 4e-39
Identities = 90/157 (57%), Positives = 104/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 63 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 122
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D G+
Sbjct: 123 EAKIED-------LSQQAQLAAAEKFKVQGETVSNIQENTQTPTVQEESEEEEVDEAGVE 175
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 176 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 158 bits (400), Expect = 6e-39
Identities = 90/157 (57%), Positives = 104/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D T +
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETDVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+L+M QA VSR KA+RALKN ND+VNAIMELT
Sbjct: 178 VKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214
>sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 157 bits (396), Expect = 2e-38
Identities = 89/157 (56%), Positives = 104/157 (66%)
Frame = +3
Query: 3 SKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFG 182
SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VFG
Sbjct: 65 SKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFG 124
Query: 183 EAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGLC 362
EAKIED T+QEES+ EE D TG+
Sbjct: 125 EAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVE 177
Query: 363 ENDIKLIMDQAQVSRNKAIRALKNADNDMVNAIMELT 473
DI+ +M QA VSR KA+RALKN N++VNAIMELT
Sbjct: 178 VKDIEWVMSQANVSRAKAVRALKNNSNNIVNAIMELT 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,937,306
Number of Sequences: 369166
Number of extensions: 721741
Number of successful extensions: 2257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)