Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E24
(292 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15231|ZN185_HUMAN Zinc finger protein 185 (LIM-domain p... 33 0.20
sp|Q62394|ZN185_MOUSE Zinc finger protein 185 (LIM-domain p... 32 0.45
>sp|O15231|ZN185_HUMAN Zinc finger protein 185 (LIM-domain protein ZNF185) (P1-A)
Length = 457
Score = 33.1 bits (74), Expect = 0.20
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 231 LRHL*LCCVQFCYKCRVCS 287
L HL +CC ++C+KC +CS
Sbjct: 412 LEHLGICCHEYCFKCGICS 430
>sp|Q62394|ZN185_MOUSE Zinc finger protein 185 (LIM-domain protein Zfp185) (P1-A)
Length = 352
Score = 32.0 bits (71), Expect = 0.45
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 231 LRHL*LCCVQFCYKCRVCS 287
L HL +CC ++C+KC +C+
Sbjct: 307 LEHLGICCHEYCFKCGICN 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,649,389
Number of Sequences: 369166
Number of extensions: 246089
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)