Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E13
(503 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13 34 0.23
sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall prot... 32 0.66
sp|Q7MXW0|GLYA_PORGI Serine hydroxymethyltransferase (Serin... 32 0.86
sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall prote... 32 0.86
sp|Q6LU17|GLYA1_PHOPR Serine hydroxymethyltransferase 1 (Se... 31 1.9
sp|Q64U78|GLYA_BACFR Serine hydroxymethyltransferase (Serin... 30 2.5
sp|P19172|CHIA_ARATH Acidic endochitinase precursor 30 2.5
sp|Q8A9S7|GLYA_BACTN Serine hydroxymethyltransferase (Serin... 30 2.5
sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance ... 30 3.3
sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall prot... 30 3.3
>sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13
Length = 717
Score = 33.9 bits (76), Expect = 0.23
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Frame = -2
Query: 403 CSAPPK---GIKAHP*-D*HTLPTLM*PFTIALPT*SGSLLLMQPPTTA-------FNGA 257
C+ PP G+KA+P + LP +M FT+ +G LL P TTA F G
Sbjct: 444 CALPPLDPGGLKAYPGGECSHLPAVMPAFTVY----NGELLYGSPATTAYYPLKLHFGGL 499
Query: 256 CPFPQGIHAYSGP 218
+P+ I +SGP
Sbjct: 500 LKYPESISYFSGP 512
>sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall protein 1 precursor
Length = 206
Score = 32.3 bits (72), Expect = 0.66
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -2
Query: 247 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 68
PQG+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PQGLANYEKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKP 77
>sp|Q7MXW0|GLYA_PORGI Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 426
Score = 32.0 bits (71), Expect = 0.86
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +3
Query: 153 YGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAVVGGCINNNEPLYVGRAMVN 332
YGG E + ++ D ++G E+A + +G AV+ C+ +
Sbjct: 57 YGGCEVVDQSEQIAIDRIKQLYGAEWANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHG 116
Query: 333 GHMSVGKVCQSHGCAFMPFG 392
GH+S G + S G + P G
Sbjct: 117 GHLSHGSLVNSSGILYRPIG 136
>sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall protein precursor (MSPRP)
Length = 236
Score = 32.0 bits (71), Expect = 0.86
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -2
Query: 247 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 68
PQG+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PQGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKP 77
>sp|Q6LU17|GLYA1_PHOPR Serine hydroxymethyltransferase 1 (Serine methylase 1) (SHMT 1)
Length = 416
Score = 30.8 bits (68), Expect = 1.9
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Frame = +3
Query: 96 GNDVTIGKVASGHNTGFFPYGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAV 275
G+ +T K A G+ G YGG E ++ D +FG EYA + +G NAV
Sbjct: 48 GSQLT-NKYAEGY-PGKRYYGGCEFVDKAEQLAIDRACQLFGAEYANVQPHSGSQANNAV 105
Query: 276 VGGCINNNEPLYVGRAMVNGHMSVGKVCQSHGCAF--MPFGGAEHKVYQYE 422
+N + + GH++ G G + +P+G E YE
Sbjct: 106 YMALLNPGDTVLGMSLAHGGHLTHGSPVNFSGKLYNIIPYGIDETGQIDYE 156
>sp|Q64U78|GLYA_BACFR Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 426
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 153 YGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAVVGGCINNNEPLYVGRAMVN 332
YGG E + ++ D +FG E+A + +G A NA V + N ++G + +
Sbjct: 57 YGGCEVVDQSEQIAIDRLKEIFGAEWANVQPHSG-AQANAAVFLAVLNPGDKFMGLNLAH 115
Query: 333 G-HMSVGKVCQSHGCAFMP 386
G H+S G + + G + P
Sbjct: 116 GGHLSHGSLVNTSGIIYTP 134
>sp|P19172|CHIA_ARATH Acidic endochitinase precursor
Length = 302
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +3
Query: 108 TIGKVASGHNTGFFPYGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAVVGGC 287
++ K + G Y G+ N N C TG + + + GNGQ P + G C
Sbjct: 20 SLSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHC 79
>sp|Q8A9S7|GLYA_BACTN Serine hydroxymethyltransferase (Serine methylase) (SHMT)
Length = 426
Score = 30.4 bits (67), Expect = 2.5
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 153 YGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAVVGGCINNNEPLYVGRAMVN 332
YGG E + ++ D +FG E+A + +G A NA V + N ++G + +
Sbjct: 57 YGGCEVVDQSEQIAIDRLKEIFGAEWANVQPHSG-AQANAAVFLAVLNPGDKFMGLNLAH 115
Query: 333 G-HMSVGKVCQSHGCAFMP 386
G H+S G + + G + P
Sbjct: 116 GGHLSHGSLVNTSGIIYTP 134
>sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guanine nucleotide exchange
factor 1 (BFA-resistant GEF 1)
Length = 1856
Score = 30.0 bits (66), Expect = 3.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -2
Query: 292 LMQPPTTAFNGACPF--PQGIHAYSGPKTCNPV-SHKTXXXXXXXXLPPYGKNPVLCPEA 122
L P + GAC P+G A S +PV S + PP + P++
Sbjct: 1751 LPSPEIPSEVGACDSEKPEGTRATSSSSPGSPVASSPSRLSPSPEGPPPLAQPPLILQPL 1810
Query: 121 TLPIVTSFPVLALPI 77
T P+ P +ALPI
Sbjct: 1811 TSPLQVGVPPMALPI 1825
>sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2 precursor
Length = 371
Score = 30.0 bits (66), Expect = 3.3
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -2
Query: 247 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 68
P+G+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PRGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKP 77
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,025,199
Number of Sequences: 369166
Number of extensions: 1263206
Number of successful extensions: 3119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3117
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)