Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E08
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 99 3e-21
sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial pr... 98 5e-21
sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial pr... 94 7e-20
sp|P40174|EFTU1_STRCO Elongation factor Tu-1 (EF-Tu-1) 80 1e-15
sp|Q53871|EFTU1_STRCU Elongation factor Tu-1 (EF-Tu-1) 80 1e-15
sp|P29542|EFTU1_STRRA Elongation factor Tu-1 (EF-Tu-1) 79 4e-15
sp|Q889X3|EFTU_PSESM Elongation factor Tu (EF-Tu) 78 6e-15
sp|P42471|EFTU_BRELN Elongation factor Tu (EF-Tu) 76 2e-14
sp|P29543|EFTU2_STRRA Elongation factor Tu-2 (EF-Tu-2) 76 3e-14
sp|O50293|EFTU_AQUPY Elongation factor Tu (EF-Tu) 75 4e-14
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 99.0 bits (245), Expect = 3e-21
Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
V++ P S+Q + VEAQ+Y+L++ EGGR KP +F ++S +WD ILP GKEL
Sbjct: 339 VMVKPGSIQPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRVILPPGKELA 398
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 296
MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 399 MPGEDLKLSLILRQPMILEKGQRFTLRDGNKTIGTGLVT 437
>sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial precursor (EF-Tu)
Length = 452
Score = 98.2 bits (243), Expect = 5e-21
Identities = 51/99 (51%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
V+ P S+Q + VEAQ+Y+LT+ EGGR KP +F ++S +WD ILP GKEL
Sbjct: 339 VMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELA 398
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 296
MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 399 MPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVT 437
>sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial precursor (EF-Tu) (P43)
Length = 452
Score = 94.4 bits (233), Expect = 7e-20
Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
V++ P S++ + VEAQ+Y+L++ EGGR KP +F ++S +WD ILP KEL
Sbjct: 339 VMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPEKELA 398
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVTKLL 305
MPGED L L++ M+LE GQRFTLR G T+G G+VT L
Sbjct: 399 MPGEDLKFNLILRQPMILEKGQRFTLRDGNRTIGTGLVTNTL 440
>sp|P40174|EFTU1_STRCO Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 80.1 bits (196), Expect = 1e-15
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D LPEG E++
Sbjct: 295 VIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 302
MPG+++ +K+ L + + +E G +F +R G T+G G VTK+
Sbjct: 355 MPGDNTEMKVELIQPVAMEEGLKFAIREGGRTVGAGQVTKI 395
>sp|Q53871|EFTU1_STRCU Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 80.1 bits (196), Expect = 1e-15
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D LPEG E++
Sbjct: 295 VIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 302
MPG+++ +K+ L + + +E G +F +R G T+G G VTK+
Sbjct: 355 MPGDNTEMKVELIQPVAMEEGLKFAIREGGRTVGAGQVTKI 395
>sp|P29542|EFTU1_STRRA Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D LPEG E++
Sbjct: 295 VIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVHLPEGTEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 305
MPG+++ +++ L + + +E G +F +R G T+G G VTK++
Sbjct: 355 MPGDNTEMRVELIQPVAMEEGLKFAIREGGRTVGAGQVTKIV 396
>sp|Q889X3|EFTU_PSESM Elongation factor Tu (EF-Tu)
Length = 397
Score = 78.2 bits (191), Expect = 6e-15
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
V++ P +V+ + EA+IY+L++ EGGR P K ++ Q Y ++ D LPEG E++
Sbjct: 295 VLVKPGTVKPHTQFEAEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSCELPEGVEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 305
MPG++ V + L K + +E G RF +R G T+G GVV K++
Sbjct: 355 MPGDNVKVSVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKII 396
>sp|P42471|EFTU_BRELN Elongation factor Tu (EF-Tu)
Length = 397
Score = 76.3 bits (186), Expect = 2e-14
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
VI+ P S+ + EAQ+Y+L++ EGGR P N++ Q Y ++ D LPEG E++
Sbjct: 295 VIVKPGSITPHTKFEAQVYILSKDEGGRHNPFYSNYRPQFYFRTTDVTGVITLPEGTEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 302
MPG+++ + + L + + +E RF +R G T+G G VTK+
Sbjct: 355 MPGDNTDMSVELIQPIAMEDRLRFAIREGGRTVGAGRVTKI 395
>sp|P29543|EFTU2_STRRA Elongation factor Tu-2 (EF-Tu-2)
Length = 397
Score = 75.9 bits (185), Expect = 3e-14
Identities = 37/102 (36%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTILPEGKELI 182
V+I P SV + EAQ Y+L++ EGGR P +N++ Q Y ++ D LP+G E++
Sbjct: 295 VVIRPGSVTPHTQFEAQAYILSKDEGGRHTPFFENYRPQFYFRTTDVTGVVTLPKGTEMV 354
Query: 183 MPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 305
MPG+++++ + L + + +E G +F +R G T+G G VT+++
Sbjct: 355 MPGDNTAMHVQLIQPIAMEEGLKFAIREGGRTVGAGQVTRIV 396
>sp|O50293|EFTU_AQUPY Elongation factor Tu (EF-Tu)
Length = 405
Score = 75.5 bits (184), Expect = 4e-14
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Frame = +3
Query: 3 VIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTI-LPEGKEL 179
V+ P SV+ + AQ+Y+L++ EGGR P N++ Q Y ++ D + LPEG E+
Sbjct: 302 VLAQPGSVKAHRKFRAQVYVLSKEEGGRHTPFFVNYRPQFYFRTADVTGTVVKLPEGVEM 361
Query: 180 IMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 305
+MPG++ +++ L + LE G RF +R G T+G GVVTK+L
Sbjct: 362 VMPGDNVELEVELIAPVALEEGLRFAIREGGRTVGAGVVTKIL 404
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,458,141
Number of Sequences: 369166
Number of extensions: 1023783
Number of successful extensions: 2944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2930
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)