Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E06
(637 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B 150 3e-36
sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP) ... 122 6e-28
sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cy... 118 1e-26
sp|Q62908|CSRP2_RAT Cysteine and glycine-rich protein 2 (Cy... 117 3e-26
sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (... 117 3e-26
sp|Q05158|CSRP2_COTJA Cysteine and glycine-rich protein 2 (... 117 3e-26
sp|P50460|CSRP2_CHICK Cysteine and glycine-rich protein 2 (... 116 4e-26
sp|P97314|CSRP2_MOUSE Cysteine and glycine-rich protein 2 (... 116 6e-26
sp|Q16527|CSRP2_HUMAN Cysteine and glycine-rich protein 2 (... 116 6e-26
sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (... 115 7e-26
>sp|Q24400|MLP2_DROME Muscle LIM protein Mlp84B
Length = 495
Score = 150 bits (379), Expect = 3e-36
Identities = 79/165 (47%), Positives = 96/165 (58%), Gaps = 7/165 (4%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C K+VYAAE++LAG V+H C KCGMCNK LDST EH+ ELYCK CH
Sbjct: 15 CGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYG 74
Query: 182 XXXXXXTLNMDKGGQFGNKDAPTGNKPNVMGGKVV-------APEDGGCPRCGKRVYDAE 340
TL+MD G QF ++ G+ P+V G + APE GCPRCG VY AE
Sbjct: 75 FGTGAGTLSMDNGSQFLREN---GDVPSVRNGARLEPRAIARAPEGEGCPRCGGYVYAAE 131
Query: 341 KAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
+ + G S+HK CF C CKK LDS ILC +K++YCK CY
Sbjct: 132 QMLA--RGRSWHKECFKCGTCKKGLDS-ILCCEAPDKNIYCKGCY 173
Score = 106 bits (265), Expect = 4e-23
Identities = 60/159 (37%), Positives = 79/159 (49%), Gaps = 1/159 (0%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEH-DNELYCKQCHXXXXXXXXX 178
C VYAAE+ LA + WH C KCG C K LDS E D +YCK C+
Sbjct: 123 CGGYVYAAEQMLARGRSWHKECFKCGTCKKGLDSILCCEAPDKNIYCKGCYAKKFGPKGY 182
Query: 179 XXXXXXXTLNMDKGGQFGNKDAPTGNKPNVMGGKVVAPEDGGCPRCGKRVYDAEKAIGCP 358
L D + + D + + K+ A GCPRCG VY AE+ +
Sbjct: 183 GYGQGGGALQSDC---YAHDDGAPQIRAAIDVDKIQARPGEGCPRCGGVVYAAEQKLS-- 237
Query: 359 DGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
G +HK CF+CK+C K LDS I ++ ++DVYC+TCY
Sbjct: 238 KGREWHKKCFNCKDCHKTLDS-INASDGPDRDVYCRTCY 275
Score = 94.4 bits (233), Expect = 2e-19
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAE-HDNELYCKQCHXXXXXXXXX 178
C VYAAE+KL+ + WH C C C+K LDS ++ D ++YC+ C+
Sbjct: 225 CGGVVYAAEQKLSKGREWHKKCFNCKDCHKTLDSINASDGPDRDVYCRTCYGKKWGPHGY 284
Query: 179 XXXXXXXTLNMDKGGQFGNKDAPTGNKP--NVMGGKVVAPEDGGCPRCGKRVYDAEKAIG 352
L D +D + N+P N + A + GCPRCG V+ AE+ +
Sbjct: 285 GFACGSGFLQTDG----LTEDQISANRPFYNPDTTSIKARDGEGCPRCGGAVFAAEQQLS 340
Query: 353 CPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
G +HK C++C +C + LDS + C + + D++C+ CY
Sbjct: 341 --KGKVWHKKCYNCADCHRPLDSVLAC-DGPDGDIHCRACY 378
Score = 94.0 bits (232), Expect = 3e-19
Identities = 56/172 (32%), Positives = 82/172 (47%), Gaps = 14/172 (8%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAE-HDNELYCKQCHXXXXXXXXX 178
C AV+AAE++L+ KVWH C C C++ LDS + D +++C+ C+
Sbjct: 328 CGGAVFAAEQQLSKGKVWHKKCYNCADCHRPLDSVLACDGPDGDIHCRACY--------- 378
Query: 179 XXXXXXXTLNMDKGGQFGNKDAPTGNKPNVM------------GGKVVAPE-DGGCPRCG 319
G FG K G+ P ++ G + P+ GGCPRCG
Sbjct: 379 -------------GKLFGPKGFGYGHAPTLVSTSGESTIQFPDGRPLAGPKTSGGCPRCG 425
Query: 320 KRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
V+ AE+ I +HK CF C +C+K LDST L + + D+YC+ CY
Sbjct: 426 FAVFAAEQMIS--KTRIWHKRCFYCSDCRKSLDSTNL-NDGPDGDIYCRACY 474
Score = 64.7 bits (156), Expect = 2e-10
Identities = 31/57 (54%), Positives = 38/57 (66%)
Frame = +2
Query: 305 CPRCGKRVYDAEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
CPRCGK VY AE+ + G FHK CF C C K LDST CT + E+++YCKTC+
Sbjct: 12 CPRCGKSVYAAEERLA--GGYVFHKNCFKCGMCNKSLDST-NCT-EHERELYCKTCH 64
>sp|P67966|CSRP1_CHICK Cysteine-rich protein 1 (CRP1) (CRP)
sp|P67967|CSRP1_COTJA Cysteine-rich protein 1 (CRP1) (CRP)
Length = 192
Score = 122 bits (307), Expect = 6e-28
Identities = 68/164 (41%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C+KAVY AE+ +H C C +C K LDSTTVA H +E+YCK C+
Sbjct: 13 CQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK------DAPTGNKPNVMGGKVVAPEDGGCPRCGKRVYDAEK 343
TL+ DKG G K PT + M KV + GCPRCG+ VY AEK
Sbjct: 73 YGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSD--GCPRCGQAVYAAEK 130
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 131 VIGA--GKSWHKSCFRCAKCGKSLESTTLA--DKDGEIYCKGCY 170
>sp|P47875|CSRP1_RAT Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 118 bits (295), Expect = 1e-26
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C+K VY AE+ +H C C +C K LDSTTVA H E+YCK C+
Sbjct: 13 CQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFG--NKDAPTGNKPNV-MGGKVVAPEDGG---CPRCGKRVYDAEK 343
TL+MDKG G +++AP G++P A + GG CPRC + VY AEK
Sbjct: 73 YGQGAGTLSMDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEK 131
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 132 VIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
>sp|Q62908|CSRP2_RAT Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Smooth muscle cell LIM protein) (SmLIM)
Length = 193
Score = 117 bits (292), Expect = 3e-26
Identities = 69/167 (41%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C + VY AE+ + +H C C +C K LDSTTVA HD E+YCK C+
Sbjct: 13 CGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK------DAPTGNKPNVMGGKVVAPEDGG---CPRCGKRVYD 334
TLNMD+G + G K PT N PN A + GG C RCG VY
Sbjct: 73 YGQGAGTLNMDRGERLGIKPESAQPHRPTTN-PNT---SKFAQKYGGAEKCSRCGDSVYA 128
Query: 335 AEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
AEK IG G +HK CF C +C K L+ST L ++E ++YCK CY
Sbjct: 129 AEKIIGA--GKPWHKNCFRCAKCGKSLESTTL--TEKEGEIYCKGCY 171
>sp|Q3MHY1|CSRP1_BOVIN Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1)
Length = 193
Score = 117 bits (292), Expect = 3e-26
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C+K VY AE+ +H C C +C K LDSTTVA H E+YCK C+
Sbjct: 13 CQKTVYFAEEVQCEGSSFHKSCFLCLVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFG--NKDAPTGNKPNV-MGGKVVAPEDGG---CPRCGKRVYDAEK 343
TL+MDKG G +++AP G++P A + GG CPRC + VY AEK
Sbjct: 73 YGQGAGTLSMDKGESLGIRHEEAP-GHRPTTNPNTSKFAQKVGGSERCPRCSQAVYAAEK 131
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 132 VIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
>sp|Q05158|CSRP2_COTJA Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2)
Length = 194
Score = 117 bits (292), Expect = 3e-26
Identities = 66/164 (40%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C + VY AE+ + +H C C +C K LDSTTVA HD E+YCK C+
Sbjct: 13 CGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK--DAPTGNKPNV-MGGKVVAPEDGG---CPRCGKRVYDAEK 343
TLNMD+G + G K +P+ ++P A + GG C RCG VY AEK
Sbjct: 73 YGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEK 132
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G +HK CF C +C K L+ST L ++E ++YCK CY
Sbjct: 133 VIGA--GKPWHKNCFRCAKCGKSLESTTL--TEKEGEIYCKGCY 172
>sp|P50460|CSRP2_CHICK Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Beta-cysteine-rich protein) (Beta-CRP)
Length = 194
Score = 116 bits (291), Expect = 4e-26
Identities = 66/164 (40%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C + VY AE+ + +H C C +C K LDSTTVA HD E+YCK C+
Sbjct: 13 CGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK--DAPTGNKPNV-MGGKVVAPEDGG---CPRCGKRVYDAEK 343
TLNMD+G + G K P+ ++P A + GG C RCG VY AEK
Sbjct: 73 YGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGAEKCSRCGDSVYAAEK 132
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G +HK CF C +C K L+ST L ++E ++YCK CY
Sbjct: 133 VIGA--GKPWHKNCFRCAKCGKSLESTTL--TEKEGEIYCKGCY 172
>sp|P97314|CSRP2_MOUSE Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Double LIM protein 1) (DLP-1)
Length = 193
Score = 116 bits (290), Expect = 6e-26
Identities = 69/167 (41%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C + VY AE+ + +H C C +C K LDSTTVA HD E+YCK C+
Sbjct: 13 CGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK------DAPTGNKPNVMGGKVVAPEDGG---CPRCGKRVYD 334
TLNMD+G + G K PT N PN A + GG C RCG VY
Sbjct: 73 YGQGAGTLNMDRGERLGIKPESAQPHRPTTN-PNT---SKFAQKYGGAEKCSRCGDSVYA 128
Query: 335 AEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
AEK IG G +HK CF C +C K L+ST L ++E ++YCK CY
Sbjct: 129 AEKIIGA--GKPWHKNCFRCAKCGKSLESTTL--TEKEGEIYCKGCY 171
>sp|Q16527|CSRP2_HUMAN Cysteine and glycine-rich protein 2 (Cysteine-rich protein 2)
(CRP2) (Smooth muscle cell LIM protein) (SmLIM)
(LIM-only protein 5)
Length = 193
Score = 116 bits (290), Expect = 6e-26
Identities = 69/167 (41%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C + VY AE+ + +H C C +C K LDSTTVA HD E+YCK C+
Sbjct: 13 CGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFGNK------DAPTGNKPNVMGGKVVAPEDGG---CPRCGKRVYD 334
TLNMD+G + G K PT N PN A + GG C RCG VY
Sbjct: 73 YGQGAGTLNMDRGERLGIKPESVQPHRPTTN-PNT---SKFAQKYGGAEKCSRCGDSVYA 128
Query: 335 AEKAIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
AEK IG G +HK CF C +C K L+ST L ++E ++YCK CY
Sbjct: 129 AEKIIGA--GKPWHKNCFRCAKCGKSLESTTL--TEKEGEIYCKGCY 171
>sp|P97315|CSRP1_MOUSE Cysteine and glycine-rich protein 1 (Cysteine-rich protein 1)
(CRP1) (CRP)
Length = 193
Score = 115 bits (289), Expect = 7e-26
Identities = 66/164 (40%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 2 CKKAVYAAEKKLAGNKVWHSMCLKCGMCNKMLDSTTVAEHDNELYCKQCHXXXXXXXXXX 181
C+K VY AE+ +H C C +C K LDSTTVA H E+YCK C+
Sbjct: 13 CQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYCKSCYGKKYGPKGYG 72
Query: 182 XXXXXXTLNMDKGGQFG--NKDAPTGNKPNV-MGGKVVAPEDGG---CPRCGKRVYDAEK 343
TL+ DKG G +++AP G++P A + GG CPRC + VY AEK
Sbjct: 73 YGQGAGTLSTDKGESLGIKHEEAP-GHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEK 131
Query: 344 AIGCPDGLSFHKTCFSCKECKKKLDSTILCTNKEEKDVYCKTCY 475
IG G S+HK+CF C +C K L+ST L ++ ++YCK CY
Sbjct: 132 VIGA--GKSWHKSCFRCAKCGKGLESTTLA--DKDGEIYCKGCY 171
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,865,111
Number of Sequences: 369166
Number of extensions: 1478901
Number of successful extensions: 5679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5540
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)