Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E04
(731 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-lik... 268 8e-72
sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-lik... 264 2e-70
sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chrom... 258 1e-68
sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial pr... 219 8e-57
sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor 218 2e-56
sp|P73627|Y1770_SYNY3 Hypothetical protein sll1770 45 2e-04
sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095 43 8e-04
sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675 42 0.002
sp|P73121|Y1919_SYNY3 Hypothetical protein slr1919 41 0.003
sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis prote... 36 0.12
>sp|Q60936|CABC1_MOUSE Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 645
Score = 268 bits (686), Expect = 8e-72
Identities = 124/239 (51%), Positives = 171/239 (71%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQ 180
L ECDY+REA + F + + P F VP+++ EL + VLTTE + G LD+ + Q
Sbjct: 399 LTLECDYQREAAYAKKFRELLKDHPFFYVPEIVDELCSPHVLTTELISGFPLDQAEGLSQ 458
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSFVDD 360
E+R+ + ++ LCL+ELFEF MQTDPNW+NF ++ ++ K+ L+DFGA+REY +SF D
Sbjct: 459 EVRNEICYNILVLCLRELFEFHVMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSFTDL 518
Query: 361 YLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFDFGRQ 540
Y++VI+ A+ Q+++ +LK S ++ FLTG+E + ME AH+DA+ ILGE F S PFDFG Q
Sbjct: 519 YIQVIRAAADQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILGEAFASEEPFDFGTQ 578
Query: 541 STTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIYDKY 717
STT++I LIPVML+HRL PPEETYSLHRK+ G FL+CSKLKAR C +F + Y Y
Sbjct: 579 STTEKIHNLIPVMLKHRLIPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYSNY 637
>sp|Q8NI60|CABC1_HUMAN Chaperone-activity of bc1 complex-like, mitochondrial precursor
(Chaperone-ABC1-like)
Length = 647
Score = 264 bits (674), Expect = 2e-70
Identities = 124/239 (51%), Positives = 168/239 (70%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQ 180
LA ECDY+REA F D P F VP+++ EL + VLTTE V G LD+ + Q
Sbjct: 402 LALECDYQREAACARKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQ 461
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSFVDD 360
EIR+ + ++ LCL+ELFEF MQTDPNW+NF ++ ++ K+ L+DFGA+REY +SF D
Sbjct: 462 EIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSFTDL 521
Query: 361 YLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFDFGRQ 540
Y+++I+ A+ ++++ + S ++ FLTG+E ++ME AH+DA+ ILGE F S PFDFG Q
Sbjct: 522 YIQIIRAAADRDRETVRAKSIEMKFLTGYEVKVMEDAHLDAILILGEAFASDEPFDFGTQ 581
Query: 541 STTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIYDKY 717
STT++I LIPVML HRL PPEETYSLHRK+ G FL+CSKLKAR C +F + Y Y
Sbjct: 582 STTEKIHNLIPVMLRHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYSNY 640
>sp|Q18486|YLC4_CAEEL Hypothetical protein C35D10.4 in chromosome III
Length = 755
Score = 258 bits (658), Expect = 1e-68
Identities = 128/245 (52%), Positives = 174/245 (71%), Gaps = 4/245 (1%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQ 180
L ECDY REA+ F + A+ VP+VI ELS+ +VLTTE V+G +D CV Q
Sbjct: 501 LKQECDYEREARAMKKFRELIADWQDVYVPEVIDELSSSRVLTTELVYGKPVDACVEEPQ 560
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVE----KGKIYLIDFGASREYQKS 348
+RD++ + + LCLKE+F +R MQTDPNW+NF + ++ L+DFGASR Y K
Sbjct: 561 VVRDYIAGKFIELCLKEIFLWRFMQTDPNWSNFFLGKHPKTGEPRLVLLDFGASRAYGKK 620
Query: 349 FVDDYLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFD 528
FVD Y+ +IK A +K++I++YSR++GFLTG+ET +ME AH+++V I+GE S+ P++
Sbjct: 621 FVDIYMNIIKSAYDGDKKKIIEYSREIGFLTGYETSVMEDAHVESVMIMGETLASNHPYN 680
Query: 529 FGRQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIY 708
F Q T RI++LIPVMLEHRLTSPPEE YSLHRKLSG +LL +KLKA VSC LF++I+
Sbjct: 681 FANQDVTMRIQKLIPVMLEHRLTSPPEEIYSLHRKLSGCYLLAAKLKATVSCGGLFHEIH 740
Query: 709 DKYKF 723
+ Y F
Sbjct: 741 ENYVF 745
>sp|Q92338|ABCI_SCHPO Protein ABC1 homolog, mitochondrial precursor
Length = 610
Score = 219 bits (557), Expect = 8e-57
Identities = 113/241 (46%), Positives = 154/241 (63%), Gaps = 2/241 (0%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQ 180
L WECDY REA F F ND F VP V E S V+T E++HGI+L K Q
Sbjct: 369 LKWECDYEREAAFAERFGSLLKNDSDFKVPMVFREASGPSVITLEYLHGIALGK-QKYSQ 427
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSFVDD 360
R+ +G + + CL+E+ E+ MQTDPNW+NFL+N + KI L+DFGAS EY + F+
Sbjct: 428 ATRNHIGYLLTKQCLREISEYHFMQTDPNWSNFLYNGKTKKIELLDFGASIEYDEKFIKK 487
Query: 361 YLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLP--FDFG 534
Y R++ A+ +N+++ K S +LG+L E+ M AHI+++ L E F P +DFG
Sbjct: 488 YCRLLLAAAHRNREKCKKLSVELGYLNNHESAQMIDAHINSIFTLAEPFAFDAPDVYDFG 547
Query: 535 RQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIYDK 714
Q+ T R+K+ IPVML+ RL PPEETYSLHR+LSG FLLC+KL A+V C +LF+ +
Sbjct: 548 DQTITARVKQQIPVMLDLRLQPPPEETYSLHRRLSGHFLLCAKLGAKVRCKELFSGMLKH 607
Query: 715 Y 717
Y
Sbjct: 608 Y 608
>sp|P27697|ABC1_YEAST Protein ABC1, mitochondrial precursor
Length = 501
Score = 218 bits (554), Expect = 2e-56
Identities = 108/238 (45%), Positives = 156/238 (65%), Gaps = 2/238 (0%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQ 180
L WECDY REA+ F +DP F VP V PE +T+ ++T + G + K Q
Sbjct: 260 LKWECDYNREARALQKFEALLKDDPAFEVPHVFPEYTTDNIITMTRMEGTEIMKLPKASQ 319
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSFVDD 360
E ++++ +MRLCL+E+ F+ MQTDPNWANFL+N KI L+DFGASR + + F+
Sbjct: 320 ETKNFISENIMRLCLEEIATFKYMQTDPNWANFLYNGRTKKIELLDFGASRPFAEDFILK 379
Query: 361 YLRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSL--PFDFG 534
Y +++ YA+L++++ + S +LG+LTG E+Q M+ AH+D+V LGE F + FDF
Sbjct: 380 YRKLLTYATLRDRKGAYEMSVQLGYLTGLESQSMKDAHVDSVLTLGEPFRGDVDKSFDFK 439
Query: 535 RQSTTKRIKELIPVMLEHRLTSPPEETYSLHRKLSGGFLLCSKLKARVSCSQLFNKIY 708
Q+ + RI+ I +ML RL PPEETYSLHRK SG FLLC+++ A V C++LF +I+
Sbjct: 440 DQTVSDRIRGNIGLMLNERLCPPPEETYSLHRKFSGIFLLCARMGASVHCAKLFKEIF 497
>sp|P73627|Y1770_SYNY3 Hypothetical protein sll1770
Length = 585
Score = 45.1 bits (105), Expect = 2e-04
Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 2/205 (0%)
Frame = +1
Query: 10 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQE-- 183
E DY RE + F F + VP+V ++ Q+LT E++ GI + +++
Sbjct: 232 ETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGL 291
Query: 184 IRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKSFVDDY 363
R + R L +L DP+ N + E G++ DFG E +
Sbjct: 292 ERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKL 351
Query: 364 LRVIKYASLQNKQQILKYSRKLGFLTGFETQIMEQAHIDAVSILGEVFTSSLPFDFGRQS 543
+ + + +N ++I+ LG L ET+ M +L PF+ QS
Sbjct: 352 MDTLFGVAEKNAERIVNSLVALGALK--ETEDMGPIRRSVQFLLDNFMDK--PFE--EQS 405
Query: 544 TTKRIKELIPVMLEHRLTSPPEETY 618
TK +L + + P T+
Sbjct: 406 ITKISDDLYEIAYDQPFRFPATFTF 430
>sp|Q55884|Y095_SYNY3 Hypothetical protein sll0095
Length = 567
Score = 43.1 bits (100), Expect = 8e-04
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Frame = +1
Query: 10 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIR 189
E DY E + F FA+ P VP++ + +T VLT E++ GI +D D++
Sbjct: 209 EIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVD-----DRQAL 263
Query: 190 DWVGSQM-----MRLC--LKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFGASREYQKS 348
+ G + +C LK+L Q+DP+ N + +G + DFG E +
Sbjct: 264 ETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVD-SQGDLIFYDFGTMAEVKII 322
Query: 349 FVDDYLRVIKYASLQNKQQILK 414
D ++ ++ Q+L+
Sbjct: 323 AKDQMVQTFFAVLRKDTNQVLE 344
>sp|P96936|Y647_MYCTU Hypothetical protein Rv0647c/MT0675
Length = 488
Score = 42.0 bits (97), Expect = 0.002
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Frame = +1
Query: 1 LAWECDYRREAQFGSWFADKFANDPI---FVVPKVIPELSTEQVLTTEFVHGISLDKCVS 171
LA E D+R EAQ + P+ VP+V + +TE+VLT E VHGI +D +
Sbjct: 236 LAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVLTMERVHGIRIDNAAA 295
Query: 172 MDQEIRDWVGSQMMRLCLKELFE----FRTMQTDPNWANFLFNVEKGKIYLIDFG 324
+ + D G ++++ L +FE D + N L+ E G+I DFG
Sbjct: 296 IRKAGFD--GVELVKALLFSVFEGGLRHGLFHGDLHAGN-LYVDEAGRIVFFDFG 347
>sp|P73121|Y1919_SYNY3 Hypothetical protein slr1919
Length = 566
Score = 41.2 bits (95), Expect = 0.003
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +1
Query: 10 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISL---DKCVSMDQ 180
E DY E + FA+ F D VP + + S ++VLT E++ G L DK +
Sbjct: 217 EIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKLTDTDKIRAAGL 276
Query: 181 EIRDWVGSQMMRLCLKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFG 324
+ D + + L++L E DP+ N LF G++ IDFG
Sbjct: 277 DPSDIIRIGVTS-GLRQLLEHGFFHADPHPGN-LFATLDGRMAYIDFG 322
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein ubiB
Length = 508
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Frame = +1
Query: 10 ECDYRREAQFGSWFADKFANDPIFVVPKVIPELSTEQVLTTEFVHGISLDKCVSMDQEIR 189
E D EA S F + +VP+V + S+ +VLT E++HGI V + +R
Sbjct: 201 ELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIP----VGQIERLR 256
Query: 190 DWVGSQMMRLC-------LKELFEFRTMQTDPNWANFLFNVEKGKIYLIDFG 324
+ G + +L ++F D + N +F G+ +DFG
Sbjct: 257 E-AGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGN-IFVAADGRYIALDFG 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,915,085
Number of Sequences: 369166
Number of extensions: 1647728
Number of successful extensions: 4595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4589
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)