Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D10
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 52 3e-07
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 46 2e-05
sp|Q92WJ0|FBPC1_RHIME Ferric cations import ATP-binding pro... 28 4.9
sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Gly... 28 6.4
sp|Q90185|VNCS_AEDEB Noncapsid protein NS-1 (Nonstructural ... 28 6.4
sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor 28 8.4
sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor 28 8.4
sp|Q9GZP7|VN1R1_HUMAN Vomeronasal type-1 receptor 1 (V1r-li... 28 8.4
sp|Q8WN92|VN1R1_GORGO Vomeronasal type-1 receptor 1 (V1r-li... 28 8.4
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 52.4 bits (124), Expect = 3e-07
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 CFDDCGTCLL-TYFVPCYLIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERRNIS 180
CF DCG CL T+ PC +G A + C LCG + +R+ R R I
Sbjct: 33 CFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA---------MRTLYRTRYGIP 81
Query: 181 GNIFEDFICALCCNCCIVAQMHQEV 255
G+I +D++ LCC C + Q+ +++
Sbjct: 82 GSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 46.2 bits (108), Expect = 2e-05
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 CFDDCGTCLLTYFVPCY-LIGKDAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERRNIS 180
CF DCG CL F C+ +G A + C LCG +R+ R R I
Sbjct: 30 CFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGTTVA---------MRTLYRTRYGIP 78
Query: 181 GNIFEDFICALCCNCCIVAQMHQEV 255
G+I +D++ L C C V Q+ +++
Sbjct: 79 GSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|Q92WJ0|FBPC1_RHIME Ferric cations import ATP-binding protein fbpC 1
Length = 353
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 128 GPANKAAKPQRKQLSPTASASFPIK*HGTKYVNKHVPQSSK 6
GPA A +P L P+A+ SF + T Y+ HV K
Sbjct: 276 GPAKLAVRPNAITLEPSAAGSFSGEITHTAYLGDHVEYEVK 316
>sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1133
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 67 DAEAVGDSCFLCGLAALFAGPCIIAYVRSKVRERRNISGNIFEDFIC-ALCCNCCIVAQM 243
D VG C CGL P A+ VR R + E+++C + N C V +
Sbjct: 767 DCPGVGTGCTACGLYLDQLKPVGTAFKIISVRYSRKVCVQFGEEYLCKTIDMNDCFVTR- 825
Query: 244 HQEVMSMG 267
H ++ +G
Sbjct: 826 HAKICIIG 833
>sp|Q90185|VNCS_AEDEB Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)
Length = 805
Score = 28.1 bits (61), Expect = 6.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 110 RLYLLDPVLLHMFDLKFVNDVILVEIFSR----ISFVHFAVTVVLLHKCIKRLCQWEDRA 277
+LY+ + H D +N I ++ SR + +H A+ V K I +L + ED A
Sbjct: 691 KLYIFKKSIQHREDKYTINAQIQNKLISRPPGLVEPIHMAIVFVKNFKEIYKLIEEEDNA 750
Query: 278 WQLNE 292
+NE
Sbjct: 751 HTVNE 755
>sp|P53813|PROS_RAT Vitamin K-dependent protein S precursor
Length = 675
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 230 LLHKCIKRLCQWEDRAWQLNENKPNTDFF 316
L +CI+ LC E+ A ++ EN P TD+F
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYF 81
>sp|Q08761|PROS_MOUSE Vitamin K-dependent protein S precursor
Length = 675
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 230 LLHKCIKRLCQWEDRAWQLNENKPNTDFF 316
L +CI+ LC E+ A ++ EN P TD+F
Sbjct: 54 LERECIEELCNKEE-AREVFENNPETDYF 81
>sp|Q9GZP7|VN1R1_HUMAN Vomeronasal type-1 receptor 1 (V1r-like receptor 1) (Vomeronasal
olfactory receptor chromosome 19 subtype I member 1)
(V3r-related gene) (hGPCR24)
Length = 353
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 91 CFLCGLAALFAGPCIIAYVRSKVRERRNISGNIFEDFICALC 216
C L G A+ P I ++ K+R R F DF C LC
Sbjct: 140 CLLNGFQAIKLNPSICRWMEIKIRSPR------FIDFCCLLC 175
>sp|Q8WN92|VN1R1_GORGO Vomeronasal type-1 receptor 1 (V1r-like receptor 1)
Length = 353
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 91 CFLCGLAALFAGPCIIAYVRSKVRERRNISGNIFEDFICALC 216
C L G A+ P I ++ K+R R F DF C LC
Sbjct: 140 CLLNGFQAIKLNPSICRWMEIKIRSPR------FIDFCCLLC 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,758,906
Number of Sequences: 369166
Number of extensions: 724908
Number of successful extensions: 1912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)