Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D01
(192 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O76200|TX31_PHONI Neurotoxin Tx3-1 precursor 30 2.3
sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 precursor (DEC-205) 30 2.3
sp|P21849|TSA4_GIALA Major surface-labeled trophozoite anti... 29 3.9
sp|P53308|YG4U_YEAST Hypothetical 11.9 kDa protein in DIE2-... 29 3.9
sp|O50165|Y378_BORBU Hypothetical protein BB0378 28 5.1
sp|Q94VF8|NU1M_VARJO NADH-ubiquinone oxidoreductase chain 1... 28 8.7
>sp|O76200|TX31_PHONI Neurotoxin Tx3-1 precursor
Length = 83
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 43 YRQCQAAFVKCTGACKDIPCQNKCSIAMEDCT 138
Y +C + +C C++ PC KC+I M++CT
Sbjct: 44 YERCGKGYKRC---CEERPC--KCNIVMDNCT 70
>sp|Q920P9|LY75_MESAU Lymphocyte antigen 75 precursor (DEC-205)
Length = 1722
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 37 EKYRQCQAAFVKCTGACKDIPCQNKCSIAME 129
EKY AA V+CTG K IP QNKC + ++
Sbjct: 939 EKYSPDSAAKVQCTG--KWIPFQNKCFLKVK 967
>sp|P21849|TSA4_GIALA Major surface-labeled trophozoite antigen 417 precursor
Length = 713
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +1
Query: 4 TAIVCQATEDQEKYRQCQAAFVKCTGACKDIPCQNKCSI----AMEDCT 138
TA C+ +DQ + + C F K AC PC C DCT
Sbjct: 395 TAANCKTCDDQGQCQACNDGFYKNGDACS--PCHESCKTCSAGTASDCT 441
>sp|P53308|YG4U_YEAST Hypothetical 11.9 kDa protein in DIE2-SMI1 intergenic region
Length = 114
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 171 LKFTFWLFIISSTVFHGNRTFILARDIFTSTCTFHKSSLALSIFFLVFSCLTNDCS 4
+ F+ +LFI S +F + F + STC+F + S FL SCL + S
Sbjct: 27 ISFSSFLFISSVCLFTSSSFFADSVTCSFSTCSFSSTFGCFSSSFLSLSCLMSTLS 82
>sp|O50165|Y378_BORBU Hypothetical protein BB0378
Length = 220
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 184 NFIFFKVYILAFYHIQYSLPWQ*NIYFGTG 95
NF+FF V++L + I +P N+Y G G
Sbjct: 4 NFLFFFVFMLNAFRIYSGIPSYLNVYSGVG 33
>sp|Q94VF8|NU1M_VARJO NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 320
Score = 27.7 bits (60), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 179 YFL*SLHFGFLSYPVQSSMAIEHLFWHG 96
Y L +L+ GFLS SSMA+ + W G
Sbjct: 96 YTLANLNLGFLSILAISSMAVNSILWAG 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,503,625
Number of Sequences: 369166
Number of extensions: 333608
Number of successful extensions: 1130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 68,354,980
effective HSP length: 35
effective length of database: 61,889,255
effective search space used: 1732899140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)