Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C23
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17950|IER2_MOUSE Immediate early response gene 2 protei... 29 2.9
sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B... 28 8.6
sp|P68875|S230_PLAFO Transmission-blocking target antigen S... 28 8.6
>sp|P17950|IER2_MOUSE Immediate early response gene 2 protein (T-lymphocyte-activated
protein) (Cycloheximide-induced gene protein) (CHX1)
(Growth factor inducible immediate early protein)
(Proline rich-induced protein 92) (Pip92)
Length = 221
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 163 PSRDTLEPCRRLEADTERDVDLTVVVPGAILPPLAVDTE 47
PSR L+P RL E +V + V P A+ PP +DT+
Sbjct: 61 PSRRALDP--RLHPpreAEVAVEVASPEAVQPPEPMDTQ 97
>sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B) (Uncoordinated protein 54)
Length = 1966
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 3 QAEQALQKLRTKNRSSVSTARG 68
QAE +L K+R+K+R+S S A G
Sbjct: 1924 QAENSLSKMRSKSRASASVAPG 1945
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 precursor
sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 precursor
Length = 3135
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 121 DTERDVDLTVVVPGAILPPLAV 56
DTE + DL ++PGAI+ P+ V
Sbjct: 1831 DTEEEKDLESILPGAIVSPMKV 1852
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,653,461
Number of Sequences: 369166
Number of extensions: 427496
Number of successful extensions: 817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)