Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C22
(813 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12759|RSP3_CHLRE Flagellar radial spoke protein 3 173 4e-43
sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ... 34 0.42
sp|Q5UX65|SYT_HALMA Threonyl-tRNA synthetase (Threonine--tR... 32 2.1
sp|P31850|TBLA_PSESZ Tabtoxin biosynthesis enzyme 32 2.7
sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferas... 30 6.0
sp|Q9RQJ6|MRAW_CAUCR S-adenosyl-methyltransferase mraW 30 7.9
>sp|P12759|RSP3_CHLRE Flagellar radial spoke protein 3
Length = 516
Score = 173 bits (439), Expect = 4e-43
Identities = 92/217 (42%), Positives = 120/217 (55%)
Frame = +3
Query: 3 IEGRQHQDVQTELYLEELIDRIEEADVEAQTDDFLDRPPTPLFVPAKSGVDIYTEILPGD 182
++GR+H D+QT++YLEEL D + EAD QTD FLDRPPTPLFVP K+G D T+I GD
Sbjct: 91 VDGRRHIDIQTDVYLEELTDTVPEADTSTQTDAFLDRPPTPLFVPQKTGTDAITQIENGD 150
Query: 183 LFHFDTEVKPLLEVLVGKTVEQSCXXXXXXXXXXNFRCQQRMFLELRNAEKVXXXXXXXX 362
LF FD EV+P+LEVLVGK +EQ R Q F ++RNAE V
Sbjct: 151 LFDFDFEVEPILEVLVGKVLEQGLMEVLEEEELAAMRAHQEHFEQIRNAELVATQRMEAA 210
Query: 363 XXXXXXXKNXXXXXXXXXXXXXXXTAEKIAAKVFAQSYLTDLVPIVFGTLADNGYFFDPV 542
K +K+AA FA+ YL+ +V VF L +GY +DPV
Sbjct: 211 ERRKLEEKERRMQQERERVERERVVRQKVAASAFARGYLSGIVNTVFDRLVSSGYIYDPV 270
Query: 543 ERDVEQGFLPWLMESVSQELEQQNEARLVLDMIIREA 653
R+VE F+PWL E L + AR V+D ++ +A
Sbjct: 271 MREVETAFMPWLKEQAIGYLARGVVARRVVDKLVEDA 307
>sp|Q8TXI4|RAD50_METKA DNA double-strand break repair rad50 ATPase
Length = 876
Score = 34.3 bits (77), Expect = 0.42
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 561 GFLPWLMESVSQELEQQNEARLVLDMIIREAVTDRHVAYHNLEEQIERARLADEASKAL 737
G P +E V +EL + E R + +REA + YHNLEE+++RAR A + K +
Sbjct: 571 GRTPSGVEDVEEELRRLEEERDHVGQKLREAEGELE-RYHNLEEKVKRAREARKELKRI 628
>sp|Q5UX65|SYT_HALMA Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 642
Score = 32.0 bits (71), Expect = 2.1
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = +3
Query: 450 AAKVFAQSY--LTDLVPIVFGTLADNGYFFDPVERDVEQGFLPWLMESVSQELEQQNEAR 623
AA VFAQ+ L + G DNG+++D D+++ L E++ E E+ E
Sbjct: 77 AAHVFAQALQRLYSDAKLTIGPWTDNGFYYDITGVDIDEDDL----EAIEAEAEEIIEE- 131
Query: 624 LVLDMIIREAVTDRHVAYHNLEE-QIERARLADEAS 728
D+ I + DR A+ E+ Q ++ L EA+
Sbjct: 132 ---DLDIERELVDRDDAFERYEDNQFKQDILETEAA 164
>sp|P31850|TBLA_PSESZ Tabtoxin biosynthesis enzyme
Length = 252
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 48 EELIDRIEEADVEAQTDDFLDRPPTPLFVPAKSGV-DIYTEILPGDLFHFDTEVKPLLEV 224
+E + + V+A T DF + P L +GV IY + L G LFH + E+KP E
Sbjct: 118 DEAVALSRKKGVDAYTADFFELEPGAL-----AGVKSIYADGLLGHLFHPELELKPTFEK 172
Query: 225 L 227
L
Sbjct: 173 L 173
>sp|Q7VPN5|PRMA_HAEDU Ribosomal protein L11 methyltransferase (L11 Mtase)
Length = 293
Score = 30.4 bits (67), Expect = 6.0
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 33 TELYLEELIDRIEEADVEAQTDDFLDRPPTPLFVPAKSGVDIYTEILPGDLFHFDTEVKP 212
T+ Y E++ D +EE + T F+D TP+F P ++ LF +T+++
Sbjct: 11 TDKYAEQISDFLEEIGAVSVT--FMDSQDTPIFEPLPGETRLWGNTDVMGLFDAETDMQA 68
Query: 213 LLEVLV 230
++ L+
Sbjct: 69 VVSALI 74
>sp|Q9RQJ6|MRAW_CAUCR S-adenosyl-methyltransferase mraW
Length = 311
Score = 30.0 bits (66), Expect = 7.9
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 585 SVSQELEQQNEARLVLDMIIREAVTDRHVAYHNLEEQIERARLADEASKALGG 743
+V+ EL + + +++ V +H+LE++I +A LA+ A KA GG
Sbjct: 203 AVNDELGELEAGLAAAERVLKPGGRLVVVTFHSLEDRIVKAFLAERAGKAPGG 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,056,258
Number of Sequences: 369166
Number of extensions: 1139736
Number of successful extensions: 3613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3612
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)