Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C14
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53458|ACT5_DIPDE Actin-5 231 7e-61
sp|Q00215|ACTC_STYPL Actin, cytoplasmic 230 1e-60
sp|P53457|ACT3_DIPDE Actin-3 229 2e-60
sp|P12716|ACTC_PISOC Actin, cytoplasmic 229 2e-60
sp|P53470|ACT1_SCHMA Actin-1 229 3e-60
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 228 4e-60
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 228 4e-60
sp|P53461|ACTC_HALRO Actin, nonmuscle 228 4e-60
sp|P69003|ACT1_HELTB Actin, cytoplasmic CyI >gi|67462094|sp... 228 4e-60
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 228 6e-60
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 231 bits (588), Expect = 7e-61
Identities = 112/117 (95%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTMYPGI+DRMQKEIS
Sbjct: 255 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEIS 314
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 315 ALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|Q00215|ACTC_STYPL Actin, cytoplasmic
Length = 375
Score = 230 bits (587), Expect = 1e-60
Identities = 110/117 (94%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EA+FQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGG+TMYPGIADRMQKEIS
Sbjct: 259 EAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIS 318
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 319 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>sp|P53457|ACT3_DIPDE Actin-3
Length = 377
Score = 229 bits (585), Expect = 2e-60
Identities = 112/117 (95%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQP+FLGLESVGIHETTYNSIMKCD+DIRKDLYAN VLSGGSTMYPGIADRMQKEIS
Sbjct: 261 EALFQPNFLGLESVGIHETTYNSIMKCDLDIRKDLYANTVLSGGSTMYPGIADRMQKEIS 320
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 321 ALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 377
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 229 bits (584), Expect = 2e-60
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKE++
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVT 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 229 bits (583), Expect = 3e-60
Identities = 111/117 (94%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLY+N VLSGGSTMYPGIADRMQKEIS
Sbjct: 260 EALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEIS 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAP TMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 320 ALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 228 bits (582), Expect = 4e-60
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQPSFLG+E+ GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+
Sbjct: 260 EALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 228 bits (582), Expect = 4e-60
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EA+FQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+
Sbjct: 260 EAVFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53461|ACTC_HALRO Actin, nonmuscle
Length = 376
Score = 228 bits (582), Expect = 4e-60
Identities = 110/117 (94%), Positives = 113/117 (96%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EALFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIV 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P69003|ACT1_HELTB Actin, cytoplasmic CyI
sp|P69002|ACT1_HELER Actin, cytoplasmic CyI
Length = 376
Score = 228 bits (582), Expect = 4e-60
Identities = 109/117 (93%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
E+LFQPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+
Sbjct: 260 ESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 228 bits (580), Expect = 6e-60
Identities = 108/117 (92%), Positives = 114/117 (97%)
Frame = +3
Query: 9 EALFQPSFLGLESVGIHETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEIS 188
EA++QPSFLG+ES GIHETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+
Sbjct: 260 EAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIT 319
Query: 189 ALAPPTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 359
ALAPPTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,270,579
Number of Sequences: 369166
Number of extensions: 1148624
Number of successful extensions: 3498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3441
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)