Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C08-2
(206 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 32 0.59
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 29 3.9
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 140 RLFTVENILSGIVCSSVSKRPPTIFVSGNPDSNL 39
RL + N+L C ++S PP + VSGN D +
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 82 LLDTLEQTIPLNIFSTVKSLLNEILDLVK 168
LLD L ++PL I+ST S+L+ +DL++
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.140 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,988,583
Number of Sequences: 369166
Number of extensions: 348557
Number of successful extensions: 1010
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)