Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C06
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 219 3e-57
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 208 3e-54
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 207 8e-54
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 207 1e-53
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 206 2e-53
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 206 2e-53
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 205 4e-53
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 203 1e-52
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 199 3e-51
sp|P49690|RL23_ARATH 60S ribosomal protein L23 198 4e-51
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 219 bits (557), Expect = 3e-57
Identities = 103/126 (81%), Positives = 117/126 (92%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGGASG +FRISLGLPV AV+NCADN+GAKN+++ISV+G + RLNRLP+A VGDM VCSV
Sbjct: 6 RGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 208 bits (530), Expect = 3e-54
Identities = 101/126 (80%), Positives = 112/126 (88%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +V
Sbjct: 6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 207 bits (527), Expect = 8e-54
Identities = 100/126 (79%), Positives = 112/126 (88%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +V
Sbjct: 6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 207 bits (526), Expect = 1e-53
Identities = 100/126 (79%), Positives = 112/126 (88%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K +LNRLPAA VGDMV+ +V
Sbjct: 6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 206 bits (523), Expect = 2e-53
Identities = 98/126 (77%), Positives = 112/126 (88%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGGASG +FRISLGLPV AV+NCADN+GAKN+++I+V G K RLNRLP+A VGDM V SV
Sbjct: 6 RGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKVLQ VV+RQRK Y+R DG+ I FEDNAGV+VNNKGEMKGSAITGPV KEC
Sbjct: 66 KKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 206 bits (523), Expect = 2e-53
Identities = 96/126 (76%), Positives = 113/126 (89%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG++GG+FRISLGLPV AVINCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +V
Sbjct: 6 RGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKV+ VVIRQRK ++R+DG + FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 205 bits (521), Expect = 4e-53
Identities = 96/126 (76%), Positives = 112/126 (88%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG +GG+FRISLGLPV AV+NCADN+GAKN+Y+I+V G + RLNRLPAA VGDM V +V
Sbjct: 6 RGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKPELRKKV+ VVIRQRK ++R+DG I FEDNAGV+VNNKGEMKGSAITGPVAKEC
Sbjct: 66 KKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 203 bits (517), Expect = 1e-52
Identities = 99/125 (79%), Positives = 109/125 (87%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG+SG +FRISLGLPV AVINCADN+GAKN+YIISV G K RLNRLPAA VGDMV+ +V
Sbjct: 6 RGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKP LRKKV VVIRQRK Y+RKDG + FEDNAGV+VNNKGEMKGSAITGPV KEC
Sbjct: 66 KKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKEC 125
Query: 363 ADMWP 377
AD+WP
Sbjct: 126 ADLWP 130
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 199 bits (505), Expect = 3e-51
Identities = 90/126 (71%), Positives = 113/126 (89%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RG ASG ++R++LGLPV A++NCADNSGAKN+YI+SVFGT +RLNRLPAA+ GDMV+ +V
Sbjct: 5 RGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATV 64
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKP+LRKK++ +V+RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGPVAKEC
Sbjct: 65 KKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKEC 124
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 125 ADLWPR 130
>sp|P49690|RL23_ARATH 60S ribosomal protein L23
Length = 140
Score = 198 bits (504), Expect = 4e-51
Identities = 92/126 (73%), Positives = 110/126 (87%)
Frame = +3
Query: 3 RGGASGGRFRISLGLPVAAVINCADNSGAKNMYIISVFGTKSRLNRLPAAAVGDMVVCSV 182
RGG SG +FR+SLGLPVAA +NCADN+GAKN+YIISV G K RLNRLP+A VGDMV+ +V
Sbjct: 6 RGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATV 65
Query: 183 KKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVNNKGEMKGSAITGPVAKEC 362
KKGKP+LRKKVL V++RQRK ++RKDG + FEDNAGV+VN KGEMKGSAITGP+ KEC
Sbjct: 66 KKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKEC 125
Query: 363 ADMWPK 380
AD+WP+
Sbjct: 126 ADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,613,606
Number of Sequences: 369166
Number of extensions: 1043028
Number of successful extensions: 2645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2572
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)