Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B18
(849 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane... 87 6e-17
sp|Q8K021|SCAM1_MOUSE Secretory carrier-associated membrane... 87 6e-17
sp|P56603|SCAM1_RAT Secretory carrier-associated membrane p... 87 6e-17
sp|O77735|SCAM1_PIG Secretory carrier-associated membrane p... 85 2e-16
sp|Q58DR5|SCAM3_BOVIN Secretory carrier-associated membrane... 77 5e-14
sp|O14828|SCAM3_HUMAN Secretory carrier-associated membrane... 74 7e-13
sp|O35609|SCAM3_MOUSE Secretory carrier-associated membrane... 71 4e-12
sp|Q9ET20|SCAM4_RAT Secretory carrier-associated membrane p... 70 6e-12
sp|Q9JKD3|SCAM5_MOUSE Secretory carrier-associated membrane... 70 7e-12
sp|Q9JKE3|SCAM5_RAT Secretory carrier-associated membrane p... 70 7e-12
>sp|O15126|SCAM1_HUMAN Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 87.0 bits (214), Expect = 6e-17
Identities = 44/120 (36%), Positives = 60/120 (50%)
Frame = +3
Query: 6 FLLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINS 185
FLLF P S++CW+R LY A +CGWI+S
Sbjct: 191 FLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISS 250
Query: 186 LAELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
L L N+ VG M IIA +T + ++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 251 LTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|Q8K021|SCAM1_MOUSE Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 87.0 bits (214), Expect = 6e-17
Identities = 44/120 (36%), Positives = 60/120 (50%)
Frame = +3
Query: 6 FLLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINS 185
FLLF P S++CW+R LY A +CGWI+S
Sbjct: 191 FLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISS 250
Query: 186 LAELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
L L N+ VG M IIA +T + ++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 251 LTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|P56603|SCAM1_RAT Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1) (SCAMP 37)
Length = 338
Score = 87.0 bits (214), Expect = 6e-17
Identities = 44/120 (36%), Positives = 60/120 (50%)
Frame = +3
Query: 6 FLLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINS 185
FLLF P S++CW+R LY A +CGWI+S
Sbjct: 191 FLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISS 250
Query: 186 LAELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
L L N+ VG M IIA +T + ++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 251 LTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|O77735|SCAM1_PIG Secretory carrier-associated membrane protein 1 (Secretory carrier
membrane protein 1)
Length = 338
Score = 85.1 bits (209), Expect = 2e-16
Identities = 43/120 (35%), Positives = 60/120 (50%)
Frame = +3
Query: 6 FLLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINS 185
FLLF P S++CW+R LY A +CGWI+S
Sbjct: 191 FLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNCGWISS 250
Query: 186 LAELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
L L ++ VG M IIA +T + ++ KVH +YR+TGASFEKA+ EF+ ++SN
Sbjct: 251 LTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSN 310
>sp|Q58DR5|SCAM3_BOVIN Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 347
Score = 77.4 bits (189), Expect = 5e-14
Identities = 37/119 (31%), Positives = 58/119 (48%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
LLF P S++CW+R +YKA GWI++L
Sbjct: 207 LLFTPCSFVCWYRPMYKAFRSDSSSNFFVFFFIFFVQDVLFVLQAIGIPGWGFSGWISAL 266
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
LK N V M ++A +T + + G +++ ++H +YR TGASF+KA+ EF+ + SN
Sbjct: 267 VVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSN 325
>sp|O14828|SCAM3_HUMAN Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 347
Score = 73.6 bits (179), Expect = 7e-13
Identities = 36/119 (30%), Positives = 57/119 (47%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
LLF P S++CW+R +YKA GWI++L
Sbjct: 207 LLFTPCSFVCWYRPMYKAFRSDSSFNFFAFFFNFFDQDVLFVLQAIGIPGWGFSGWISAL 266
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
K N V M ++A +T + + G +++ ++H +YR TGASF+KA+ EF+ + SN
Sbjct: 267 VVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSN 325
>sp|O35609|SCAM3_MOUSE Secretory carrier-associated membrane protein 3 (Secretory carrier
membrane protein 3)
Length = 349
Score = 70.9 bits (172), Expect = 4e-12
Identities = 33/119 (27%), Positives = 56/119 (47%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
LLF P S++CW+R +YKA GW+ +L
Sbjct: 209 LLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVFFVLQAIGIPGWGFSGWVTAL 268
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFSRDLVSN 365
+ + V M ++A +T + + G +++ ++H +YR TGASF+KA+ EF+ + SN
Sbjct: 269 VVVGSKPAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYRQTGASFQKAQQEFAAGVFSN 327
>sp|Q9ET20|SCAM4_RAT Secretory carrier-associated membrane protein 4 (Secretory carrier
membrane protein 4) (SCAMP-4)
Length = 230
Score = 70.5 bits (171), Expect = 6e-12
Identities = 37/113 (32%), Positives = 52/113 (46%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
+LF P SY+CWFR YKA A +CGW+ ++
Sbjct: 79 VLFTPCSYVCWFRPAYKAFRADSSFNFMAFFFIFGAQFVLTVIQAIGFSGWGACGWLATI 138
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFS 347
T+VG M I A +++ + +I I KVHRIYR G S +KA+ E+S
Sbjct: 139 GFFGTSVGAAVVMLIPAIMFSLSAVVMAITIVKVHRIYRGAGGSLQKAQTEWS 191
>sp|Q9JKD3|SCAM5_MOUSE Secretory carrier-associated membrane protein 5 (Secretory carrier
membrane protein 5)
Length = 235
Score = 70.1 bits (170), Expect = 7e-12
Identities = 36/113 (31%), Positives = 51/113 (45%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
+LF P SY+CWFR +YKA A CGWI ++
Sbjct: 79 ILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATI 138
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFS 347
+ TN+G M I +TVV + I + VH+ YR +G SF KA+ E++
Sbjct: 139 SFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWT 191
>sp|Q9JKE3|SCAM5_RAT Secretory carrier-associated membrane protein 5 (Secretory carrier
membrane protein 5)
Length = 235
Score = 70.1 bits (170), Expect = 7e-12
Identities = 36/113 (31%), Positives = 51/113 (45%)
Frame = +3
Query: 9 LLFVPASYICWFRSLYKAXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXSCGWINSL 188
+LF P SY+CWFR +YKA A CGWI ++
Sbjct: 79 ILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATI 138
Query: 189 AELKTNVGVGAFMCIIAGCYTVVLITGSILIFKVHRIYRSTGASFEKAKAEFS 347
+ TN+G M I +TVV + I + VH+ YR +G SF KA+ E++
Sbjct: 139 SFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWT 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,616,604
Number of Sequences: 369166
Number of extensions: 1498832
Number of successful extensions: 3216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3201
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)