Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B14
(837 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95PU1|TPM_ECHMU Tropomyosin 260 4e-69
sp|Q26519|TPM_SCHJA Tropomyosin 258 1e-68
sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 256 5e-68
sp|Q26503|TPM_SCHHA Tropomyosin 256 7e-68
sp|Q23758|TPM_CLOSI Tropomyosin 241 1e-63
sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 231 1e-60
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 231 1e-60
sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 229 7e-60
sp|Q9GZ71|TPM_HALDV Tropomyosin 226 8e-59
sp|Q25145|TPM_HALRU Tropomyosin 219 6e-57
>sp|Q95PU1|TPM_ECHMU Tropomyosin
Length = 284
Score = 260 bits (664), Expect = 4e-69
Identities = 143/274 (52%), Positives = 186/274 (67%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKLEKENA EK++ N+ L +++ Q E D VQ +L E +
Sbjct: 10 AMKLEKENALEKAINLENQLKEKAKDFEKKEEEMNDWLSKVKNIQTEVDTVQESLQEAIS 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EETEKRAT+AEAEVAA++RR+ LL+ D EQ+ R E S KL+ ASK AE +E+ RK
Sbjct: 70 KLEETEKRATNAEAEVAAMTRRIRLLEEDFEQSSGRLTETSTKLDDASKAAEESERNRKT 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E +S +DE++ LE+QVKEAKYIAEDA+RKY+EAAR+LA++ VDLER E+R
Sbjct: 130 LETRSISDDERMAQLEEQVKEAKYIAEDAERKYDEAARRLAVTEVDLERAESRLETSESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
I+G NMKSLE+SEQE+++REESYE+TIRD+TERLK V+KL
Sbjct: 190 IVELEEELRIVGNNMKSLEVSEQESLQREESYEETIRDLTERLKTAEQRAAEAERQVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELTN 824
++EVDRLED+LLSE E+Y+ +SGELD FAELT+
Sbjct: 250 QNEVDRLEDELLSEKERYRAISGELDTTFAELTS 283
>sp|Q26519|TPM_SCHJA Tropomyosin
Length = 284
Score = 258 bits (660), Expect = 1e-68
Identities = 144/273 (52%), Positives = 182/273 (66%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKLEKENA E++V +EL +++ Q +CD+VQ L E
Sbjct: 10 AMKLEKENAMERAVQYEELLKKKEEEREKRENEISELNTKMKQAQIDCDEVQETLQEQMN 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EETEKRAT+AEA+VAA++RR+ LL+ D+E + +R E KLE ASK AE +E+ RK+
Sbjct: 70 KLEETEKRATNAEAQVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRKD 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E++S +DE+LN LE Q KEAKYIAEDADRKY+EAARKLAI+ VD ER E R
Sbjct: 130 LEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFERAEARLEAAESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMK+LEISEQE+ +REESYE+TIRD+TERLK V+KL
Sbjct: 190 IVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELT 821
++EVD LEDDLL+E E+YK LSGELD FAELT
Sbjct: 250 QNEVDHLEDDLLAEKERYKALSGELDQTFAELT 282
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49)
Length = 284
Score = 256 bits (654), Expect = 5e-68
Identities = 143/273 (52%), Positives = 180/273 (65%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKLEKENA E++V EL +++ Q +CD+ Q L E
Sbjct: 10 AMKLEKENAMERAVQYEELLKKKEEEREKRESEIAELNNKMKQAQIDCDEAQETLQEQMN 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EET+KRAT+AEAEVAA++RR+ LL+ D+E + +R E KLE ASK AE +E+ RK+
Sbjct: 70 KLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRKD 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E++S +DE+LN LE Q KEAKYIAEDADRKY+EAARKLAI+ VD ER E R
Sbjct: 130 LEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFERAEARLEAAESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMK+LEISEQE+ +REESYE+TIRD+TERLK V+KL
Sbjct: 190 IVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELT 821
++EVD LEDDLL+E E+YK LSGELD FAELT
Sbjct: 250 QNEVDHLEDDLLAEKERYKALSGELDQTFAELT 282
>sp|Q26503|TPM_SCHHA Tropomyosin
Length = 284
Score = 256 bits (653), Expect = 7e-68
Identities = 143/273 (52%), Positives = 181/273 (66%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKLEKENA E++V EL +++ Q +CD+VQ L E
Sbjct: 10 AMKLEKENAMERAVQYEELLKKKEEEREKRESEIAELNTKMKQAQIDCDEVQETLQEQMN 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EET+KRAT+AEAEVAA++RR+ LL+ D+E + +R E KLE ASK AE +E+ RK+
Sbjct: 70 KLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSSRLTETLTKLEEASKTAEESERGRKD 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E++S +DE+LN LE Q KEAKYIAEDADRKY+EAARKLAI+ VD +R E R
Sbjct: 130 LEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDEAARKLAIAEVDFKRAEARLEAAESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMK+LEISEQE+ +REESYE+TIRD+TERLK V+KL
Sbjct: 190 IVELEEELRVIGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRATEAERQVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELT 821
++EVD LEDDLL+E E+YK LSGELD FAELT
Sbjct: 250 QNEVDHLEDDLLAEKERYKALSGELDQTFAELT 282
>sp|Q23758|TPM_CLOSI Tropomyosin
Length = 284
Score = 241 bits (616), Expect = 1e-63
Identities = 138/273 (50%), Positives = 174/273 (63%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKLEKENA E++V EL ++ Q E D++Q AL +
Sbjct: 10 AMKLEKENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEIQEALQDSLN 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EET+KRAT+AEAEVA ++RR+ LL+ D+E + +R E K + ASK AE +E+ RKE
Sbjct: 70 KMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSSRLTETLAKFDEASKTAEESERGRKE 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E++S +DE L+ LE Q KE KYIAEDADRKY+EAARKLAI VD ER E+R
Sbjct: 130 LEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDEAARKLAIVEVDFERAESRLEAAESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMK+LEISEQE+ +REESYE+TIRD+TERLK V+KL
Sbjct: 190 IVELEEELRVVGNNMKALEISEQESAQREESYEETIRDLTERLKAAEQRAAEAERQVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELT 821
++EVD LEDDLLSE +YK LSG LD FAELT
Sbjct: 250 QNEVDHLEDDLLSEKIRYKDLSGGLDQTFAELT 282
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII)
Length = 284
Score = 231 bits (590), Expect = 1e-60
Identities = 129/272 (47%), Positives = 171/272 (62%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMK+EKENA +++ N L K+ Q + D L+E T
Sbjct: 10 AMKMEKENAIDRAEQMEQKVRDVEETKNKLEEEFNNLQKKFSNLQNDFDTANEGLTEAQT 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K E +EK + E++ A L+RR+ LL+ D+E++E R A+EKLE ASK A+ +E+ RK
Sbjct: 70 KLEASEKHVAELESDTAGLNRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRKV 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E +S +DE+L+ LE Q+KEAKYIAEDA+RKY+EAARKLAI+ VDLER E R
Sbjct: 130 LESRSLADDERLDGLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARLEAAEAK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMKSLEISEQEA +RE+SYE+TIRD+T+RLK V+KL
Sbjct: 190 IIELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRATEAERTVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAEL 818
+ EVDRLED+LL+E E+YK +S ELD FAEL
Sbjct: 250 QKEVDRLEDELLAEKERYKSISDELDSTFAEL 281
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 231 bits (590), Expect = 1e-60
Identities = 129/272 (47%), Positives = 172/272 (63%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMK+EKENA +++ N L K+ I + + D + L + NT
Sbjct: 10 AMKMEKENALDRAEQVEQKLRDCECNKNKVEEDLNNLQKKFAILENDFDSINEQLLDANT 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K E +EK+ + E+E A L RR+ LL+ D+E++E R A+EKLE ASK A+ +E+ RK
Sbjct: 70 KLEASEKKNAEIESETAGLQRRIQLLEEDLERSEERLQSATEKLEEASKAADESERGRKV 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E +S +DE+L+ LE Q+KEAKYIAEDA+RK++EAARKLAI+ VDLER E R
Sbjct: 130 LESRSLADDERLDGLEAQLKEAKYIAEDAERKFDEAARKLAITEVDLERAEARLEAAEAK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMKSLEISEQEA +RE+SYE+TIRD+T+RLK V+KL
Sbjct: 190 ILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRASEAERTVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAEL 818
+ EVDRLED+LL+E E+YK S ELD FAEL
Sbjct: 250 QKEVDRLEDELLAEKERYKATSDELDSTFAEL 281
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII)
Length = 284
Score = 229 bits (584), Expect = 7e-60
Identities = 128/273 (46%), Positives = 178/273 (65%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMKL+KENA +++ E+LK++Q + + Q L+E NT
Sbjct: 10 AMKLDKENAVDEADQLEAKLREKELEMQTKDEEVAEVLKKIQQVDTDKETAQTQLAETNT 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K EET+KRAT+AEAEVA+L +R+ L+ ++E TE R EA+ KLE ASK A+ +++ RK
Sbjct: 70 KLEETDKRATEAEAEVASLQKRIRQLEDELESTETRLQEATVKLEEASKAADESDRGRKV 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E ++ ++E++N LE+Q+KE+ ++AEDADRKY+EAARKLAI+ V+LER E+R
Sbjct: 130 LENRTFADEERINQLEEQLKESTFMAEDADRKYDEAARKLAITEVELERAESRLEAAESK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
I+G N+KSLEISEQEA +REE+YE+ IRD+TERLK V L
Sbjct: 190 ITELEEELRIVGNNVKSLEISEQEAAQREEAYEENIRDLTERLKAAEDRAQESERLVNTL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAELT 821
+++ DRLED+L++E EKYK LS ELD FAELT
Sbjct: 250 QADADRLEDELVTEKEKYKALSEELDSTFAELT 282
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 226 bits (575), Expect = 8e-59
Identities = 126/272 (46%), Positives = 169/272 (62%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMK+EKENA +++ N L K+ + + D V L E
Sbjct: 10 AMKMEKENAVDRAEQNEQKLRDTEEQKAKIEEDLNNLQKKCANLENDFDNVNEQLQEAMA 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K E +EKR T+ E EV+ +R++ LL+ D+E+ E R A+E+LE ASK A+ +E+ +
Sbjct: 70 KLETSEKRVTEMEQEVSGTTRKITLLEEDLERNEERLQTATERLEEASKAADESERGARV 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E +S +DE+++ LE Q+KEAKYIAEDA+RKY+EAARKLAI+ VDLER E R
Sbjct: 130 LESRSLADDERIDQLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARLEAAEAK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G NMKSLEISEQEA +RE+SYE+TIRD+T+RLK V+KL
Sbjct: 190 ILELEEELKVVGNNMKSLEISEQEASQREDSYEETIRDLTQRLKDAENRATEAERTVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAEL 818
+ EVDRLED+LL+E EKYK +S ELD FAEL
Sbjct: 250 QKEVDRLEDELLAEKEKYKAISDELDQTFAEL 281
>sp|Q25145|TPM_HALRU Tropomyosin
Length = 284
Score = 219 bits (559), Expect = 6e-57
Identities = 123/272 (45%), Positives = 167/272 (61%)
Frame = +3
Query: 3 AMKLEKENADEKSVXXXXXXXXXXXXXXXXXXXXNELLKELQIKQQECDKVQLALSEVNT 182
AMK+EKENA +++ N L K+ + + D V +
Sbjct: 10 AMKMEKENAVDRAEQNEQKLRDTEEQKAKIEEDLNNLQKKCANLENDFDSVNEQVQVAMA 69
Query: 183 KCEETEKRATDAEAEVAALSRRMVLLQADIEQTENRFIEASEKLEVASKLAEVNEKERKE 362
K E +EKR T+ E EV+ +R++ LL+ D+E+ E R A+E+LE ASKL + +E+ +
Sbjct: 70 KLETSEKRVTEMEQEVSGTTRKITLLEEDLERNEERLQTATERLEEASKLPDESERGARV 129
Query: 363 YEVKSTLEDEKLNHLEQQVKEAKYIAEDADRKYEEAARKLAISVVDLERTETRXXXXXXX 542
E +S +DE+++ LE Q+KEAKYIAEDA+RKY+EAARKLAI+ VDLER E R
Sbjct: 130 LESRSLADDERIDQLEAQLKEAKYIAEDAERKYDEAARKLAITEVDLERAEARPKAAEAK 189
Query: 543 XXXXXXXXXIMGKNMKSLEISEQEAMRREESYEDTIRDITERLKXXXXXXXXXXXXVAKL 722
++G N KSLEISEQEA +RE+SYE+TIRD+T+RLK V+KL
Sbjct: 190 ILELEEELKVVGNNTKSLEISEQEASQREDSYEETIRDLTQRLKDAENRATEAERTVSKL 249
Query: 723 ESEVDRLEDDLLSEMEKYKGLSGELDFAFAEL 818
+ EVDRLED+LL+E EKYK +S ELD FAEL
Sbjct: 250 QKEVDRLEDELLAEKEKYKAISDELDQTFAEL 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,757,567
Number of Sequences: 369166
Number of extensions: 913016
Number of successful extensions: 5845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5496
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)