Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B12
(637 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 165 8e-41
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 133 4e-31
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 124 3e-28
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 123 5e-28
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 121 1e-27
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 121 1e-27
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 107 3e-23
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 100 4e-21
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 87 3e-17
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 76 8e-14
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 165 bits (418), Expect = 8e-41
Identities = 77/183 (42%), Positives = 109/183 (59%), Gaps = 9/183 (4%)
Frame = +2
Query: 44 SRKMSSRRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGD 223
+R ++ M C+ CG+ GHMSR+C + K G+ + C+ CG+ GH+SR+CP + +G
Sbjct: 62 ARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAA-KGFECYKCGQEGHLSRDCPSS--QGG 118
Query: 224 RRGGYER---RSDDRRGNQRSTECYNCHETGHMSRECPKQRN--QGSRNNGCYKCGENGH 388
RGGY + RS + G CY C + GH+SR+CP + G+ + CYKCG+ GH
Sbjct: 119 SRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGH 178
Query: 389 MARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN----GQSDKKCYKCNKVGHMSRDCN 556
++RDC G KCY C ++GHMSRECP+ G D+ CYKC K GH+SR+C
Sbjct: 179 ISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECP 238
Query: 557 E*G 565
E G
Sbjct: 239 EAG 241
Score = 158 bits (400), Expect = 1e-38
Identities = 86/216 (39%), Positives = 106/216 (49%), Gaps = 36/216 (16%)
Frame = +2
Query: 38 D*SRKMSSRRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNR 217
D R + C NCGK+GH +REC E G +RS CF CGE GHMSRECP
Sbjct: 6 DVKRPRTESSTSCRNCGKEGHYARECPEADSKGD-ERSTTCFRCGEEGHMSRECPNEARS 64
Query: 218 GD-------RRGGYERRSDD-----RRGNQRSTECYNCHETGHMSRECPKQRNQGSR--- 352
G R G S D + G + ECY C + GH+SR+CP + GSR
Sbjct: 65 GAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQG-GSRGGY 123
Query: 353 ---------------NNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSREC 487
+ CYKCG+ GH++RDC G CY C GH+SR+C
Sbjct: 124 GQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDC 183
Query: 488 PNGQS------DKKCYKCNKVGHMSRDCNE*GSIGT 577
PNGQ D+KCYKC + GHMSR+C GS G+
Sbjct: 184 PNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGS 219
Score = 133 bits (335), Expect = 3e-31
Identities = 59/143 (41%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CY CG GH+SR+C + SG C+ CG++GH+SR+CP +GGY D
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG------QGGYSGAGD 195
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGN---D 424
+ CY C E+GHMSRECP + GS + CYKCG+ GH++R+C + GG+
Sbjct: 196 RK--------CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGS 247
Query: 425 RQERQIKCYNCNQNGHMSRECPN 493
R CY C + GH+SR+CP+
Sbjct: 248 RGGGDRTCYKCGEAGHISRDCPS 270
Score = 131 bits (330), Expect = 1e-30
Identities = 64/168 (38%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Frame = +2
Query: 116 TENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNC 295
TE+ K + S +C NCG+ GH +RECP+ D++GD +RST C+ C
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGD---------------ERSTTCFRC 48
Query: 296 HETGHMSRECPKQRNQGSRN-NGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGH 472
E GHMSRECP + G+ C++CGE GHM+RDC + +CY C Q GH
Sbjct: 49 GEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC-PNSAKPGAAKGFECYKCGQEGH 107
Query: 473 MSRECPNGQ---------------------SDKKCYKCNKVGHMSRDC 553
+SR+CP+ Q D+ CYKC GH+SRDC
Sbjct: 108 LSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 76.6 bits (187), Expect = 5e-14
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +2
Query: 311 MSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 490
MS +R + + C CG+ GH AR+C E + ER C+ C + GHMSRECP
Sbjct: 1 MSETEDVKRPRTESSTSCRNCGKEGHYARECP-EADSKGDERSTTCFRCGEEGHMSRECP 59
Query: 491 N-----GQSDKKCYKCNKVGHMSRDCNE*GSIGTAK 583
N C++C + GHMSRDC G AK
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAK 95
Score = 62.8 bits (151), Expect = 7e-10
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGA---CFNCGESGHMSRECPQN 208
CY CGK GH+SREC E S G R G C+ CGE+GH+SR+CP +
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 133 bits (334), Expect = 4e-31
Identities = 64/161 (39%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNC K GH+ +CT + Q C+NCGE+GH+ EC
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ----CYNCGETGHVRSECTVQ--------------- 65
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNN-GCYKCGENGHMARDCTQEGGNDRQ 430
C+NC++TGH+SRECP+ + + CYKCG HMA+DC +E G
Sbjct: 66 ---------RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG- 115
Query: 431 ERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 553
+KCY C Q GHMSR+C Q+D+ CY CN+ GH+S+DC
Sbjct: 116 ---LKCYTCGQAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 107 bits (267), Expect = 3e-23
Identities = 52/140 (37%), Positives = 71/140 (50%)
Frame = +2
Query: 71 ECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRS 250
+CYNCG+ GH+ ECT + CFNC ++GH+SRECP+
Sbjct: 48 QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPE--------------- 82
Query: 251 DDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQ 430
+ CY C HM+++C K+ G CY CG+ GHM+RDC NDR
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMKE--DGISGLKCYTCGQAGHMSRDCQ----NDR- 135
Query: 431 ERQIKCYNCNQNGHMSRECP 490
CYNCN+ GH+S++CP
Sbjct: 136 ----LCYNCNETGHISKDCP 151
Score = 93.2 bits (230), Expect = 5e-19
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Frame = +2
Query: 155 ACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQ 334
AC+ CG+ GH++ +C D R CYNC++ GH+ +C
Sbjct: 5 ACYVCGKIGHLAEDC-----------------DSER------LCYNCNKPGHVQTDCTMP 41
Query: 335 RNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQ----- 499
R + CY CGE GH+ +CT + +C+NCNQ GH+SRECP +
Sbjct: 42 RTVEFKQ--CYNCGETGHVRSECTVQ----------RCFNCNQTGHISRECPEPKKTSRF 89
Query: 500 SDKKCYKCNKVGHMSRDC 553
S CYKC HM++DC
Sbjct: 90 SKVSCYKCGGPNHMAKDC 107
Score = 75.1 bits (183), Expect = 1e-13
Identities = 33/92 (35%), Positives = 50/92 (54%)
Frame = +2
Query: 284 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 463
CY C + GH++ +C +R CY C + GH+ DCT R +CYNC +
Sbjct: 6 CYVCGKIGHLAEDCDSERL-------CYNCNKPGHVQTDCTMP----RTVEFKQCYNCGE 54
Query: 464 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 559
GH+ EC + ++C+ CN+ GH+SR+C E
Sbjct: 55 TGHVRSEC----TVQRCFNCNQTGHISRECPE 82
Score = 74.3 bits (181), Expect = 2e-13
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDN-RGDRRGGYERRS 250
C+NC + GH+SREC E KK+ + +C+ CG HM+++C + D G + +
Sbjct: 67 CFNCNQTGHISRECPEPKKTSRFSKV-SCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAG 125
Query: 251 DDRRGNQRSTECYNCHETGHMSRECPK 331
R Q CYNC+ETGH+S++CPK
Sbjct: 126 HMSRDCQNDRLCYNCNETGHISKDCPK 152
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 PNHIF-D*SRKMSSRRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSREC 199
PNH+ D ++ ++CY CG+ GHMSR+C Q C+NC E+GH+S++C
Sbjct: 100 PNHMAKDCMKEDGISGLKCYTCGQAGHMSRDC---------QNDRLCYNCNETGHISKDC 150
Query: 200 PQ 205
P+
Sbjct: 151 PK 152
Score = 44.7 bits (104), Expect = 2e-04
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +2
Query: 437 QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 553
Q CY C + GH++ +C S++ CY CNK GH+ DC
Sbjct: 3 QKACYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
Score = 32.3 bits (72), Expect = 1.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 500 SDKKCYKCNKVGHMSRDCN 556
S K CY C K+GH++ DC+
Sbjct: 2 SQKACYVCGKIGHLAEDCD 20
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 124 bits (310), Expect = 3e-28
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Frame = +2
Query: 71 ECYNCGKDGHMSRECTENKKSGSGQRS--------------GACFNCGESGHMSRECPQN 208
EC+ CG+ GH +REC G G RS C+ CGESGH++++C
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64
Query: 209 DNR---GDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGE 379
+++ RGG+ + +R CYNC + GH++R+C Q CY CGE
Sbjct: 65 EDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ-----KCYSCGE 119
Query: 380 NGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 553
GH+ +DCT ++KCY C + GH++ C + S+ CY+C + GH++R+C
Sbjct: 120 FGHIQKDCT----------KVKCYRCGETGHVAINC-SKTSEVNCYRCGESGHLAREC 166
Score = 115 bits (288), Expect = 9e-26
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Frame = +2
Query: 149 SGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTE-----CYNCHETGHM 313
S CF CG +GH +RECP RG RG RS R G Q + CY C E+GH+
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRG--RG---MRSRGRAGFQFMSSSLPDICYRCGESGHL 57
Query: 314 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 493
+++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R+C +
Sbjct: 58 AKDCDLQEDK-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLARDCDH 108
Query: 494 GQSDKKCYKCNKVGHMSRDCNE 559
++KCY C + GH+ +DC +
Sbjct: 109 A-DEQKCYSCGEFGHIQKDCTK 129
Score = 92.8 bits (229), Expect = 7e-19
Identities = 42/113 (37%), Positives = 65/113 (57%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNCG+ GH++++C E K+ +R C+NCG+ GH++R+C D + G
Sbjct: 69 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFG 121
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 412
+ + +CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 122 HIQKDCTKVKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 169
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 123 bits (308), Expect = 5e-28
Identities = 65/172 (37%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSREC--PQNDNRGDRRG--GYE 241
CYNCG++GH +RECT + C+NC ++GH + EC PQ + G G+
Sbjct: 19 CYNCGENGHQARECT---------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHL 69
Query: 242 RRSDDRRGNQRS-TECYNCHETGHMSRECPKQRNQ------GSRNN-GCYKCGENGHMAR 397
R N R ECY C GH++R+C Q G R+N CY CG GH AR
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQAR 129
Query: 398 DCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 553
DCT +KCY+C + GH S EC + CYKCN+ GH++ +C
Sbjct: 130 DCTMG---------VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 87.4 bits (215), Expect = 3e-17
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +2
Query: 284 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 463
CYNC E GH +REC K + CY C + GH A +CT+ +++ CY C
Sbjct: 19 CYNCGENGHQARECTK-------GSICYNCNQTGHKASECTEP------QQEKTCYACGT 65
Query: 464 NGHMSRECP---NGQSDKKCYKCNKVGHMSRDCNE*G 565
GH+ R+CP N + +CYKC +VGH++RDC G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Score = 78.6 bits (192), Expect = 1e-14
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +2
Query: 326 PKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSD 505
P+ G R CY CGENGH AR+CT+ CYNCNQ GH + EC Q +
Sbjct: 10 PQTTRPGPR---CYNCGENGHQARECTKGS---------ICYNCNQTGHKASECTEPQQE 57
Query: 506 KKCYKCNKVGHMSRDC 553
K CY C GH+ RDC
Sbjct: 58 KTCYACGTAGHLVRDC 73
Score = 75.1 bits (183), Expect = 1e-13
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 71 ECYNCGKDGHMSRECTENKKSGSGQRSG-----ACFNCGESGHMSRECPQNDNRGDRRGG 235
ECY CG+ GH++R+C N + G+ G C+ CG GH +R+C
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTM---------- 133
Query: 236 YERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCT 406
+CY+C + GH S EC Q S CYKC + GH+A +CT
Sbjct: 134 -------------GVKCYSCGKIGHRSFEC----QQASDGQLCYKCNQPGHIAVNCT 173
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/86 (32%), Positives = 38/86 (44%)
Frame = +2
Query: 68 MECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERR 247
M CY CG GH +R+CT K C++CG+ GH S EC Q
Sbjct: 116 MNCYACGSYGHQARDCTMGVK---------CYSCGKIGHRSFECQQ-------------A 153
Query: 248 SDDRRGNQRSTECYNCHETGHMSREC 325
SD + CY C++ GH++ C
Sbjct: 154 SDGQL-------CYKCNQPGHIAVNC 172
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 121 bits (304), Expect = 1e-27
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Frame = +2
Query: 71 ECYNCGKDGHMSRECTENKKSGSGQRS--------------------GACFNCGESGHMS 190
EC+ CG+ GH +REC G G RS C+ CGESGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 191 RECPQNDNR---GDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNG 361
++C ++ RGG+ + +R CYNC + GH++R+C Q
Sbjct: 65 KDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ-----K 119
Query: 362 CYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHM 541
CY CGE GH+ +DCT ++KCY C + GH++ C + S+ CY+C + GH+
Sbjct: 120 CYSCGEFGHIQKDCT----------KVKCYRCGETGHVAINC-SKTSEVNCYRCGESGHL 168
Query: 542 SRDC 553
+R+C
Sbjct: 169 AREC 172
Score = 115 bits (289), Expect = 7e-26
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 9/146 (6%)
Frame = +2
Query: 149 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 301
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 302 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 481
+GH++++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQEDE-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 110
Query: 482 ECPNGQSDKKCYKCNKVGHMSRDCNE 559
+C + ++KCY C + GH+ +DC +
Sbjct: 111 DCDHA-DEQKCYSCGEFGHIQKDCTK 135
Score = 92.8 bits (229), Expect = 7e-19
Identities = 42/113 (37%), Positives = 65/113 (57%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNCG+ GH++++C E K+ +R C+NCG+ GH++R+C D + G
Sbjct: 75 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFG 127
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 412
+ + +CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 128 HIQKDCTKVKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 175
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 121 bits (304), Expect = 1e-27
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Frame = +2
Query: 71 ECYNCGKDGHMSRECTENKKSGSGQRS--------------------GACFNCGESGHMS 190
EC+ CG+ GH +REC G G RS C+ CGESGH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 191 RECPQNDNR--GDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGC 364
++C ++ RGG+ + +R CYNC + GH++R+C Q C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ-----KC 119
Query: 365 YKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMS 544
Y CGE GH+ +DCT ++KCY C + GH++ C + S+ CY+C + GH++
Sbjct: 120 YSCGEFGHIQKDCT----------KVKCYRCGETGHVAINC-SKTSEVNCYRCGESGHLA 168
Query: 545 RDC 553
R+C
Sbjct: 169 REC 171
Score = 114 bits (286), Expect = 2e-25
Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Frame = +2
Query: 149 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 301
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 302 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 481
+GH++++C Q + CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQ------EDACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 109
Query: 482 ECPNGQSDKKCYKCNKVGHMSRDCNE 559
+C + ++KCY C + GH+ +DC +
Sbjct: 110 DCDHA-DEQKCYSCGEFGHIQKDCTK 134
Score = 92.8 bits (229), Expect = 7e-19
Identities = 42/113 (37%), Positives = 65/113 (57%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNCG+ GH++++C E K+ +R C+NCG+ GH++R+C D + G
Sbjct: 74 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFG 126
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 412
+ + +CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 127 HIQKDCTKVKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 174
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 107 bits (266), Expect = 3e-23
Identities = 51/131 (38%), Positives = 73/131 (55%)
Frame = +2
Query: 161 FNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRN 340
F CG SGH +R CP+ G RRGG R S CY C E+G ++ C
Sbjct: 7 FACGHSGHWARGCPRG-GAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCV---- 61
Query: 341 QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYK 520
N CY CG +GH+A+DC + ++ER+ CY C + GH++R+C + Q ++KCY
Sbjct: 62 --LLGNICYNCGRSGHIAKDCK----DPKRERRQHCYTCGRLGHLARDC-DRQKEQKCYS 114
Query: 521 CNKVGHMSRDC 553
C K+GH+ +DC
Sbjct: 115 CGKLGHIQKDC 125
Score = 86.3 bits (212), Expect = 6e-17
Identities = 42/138 (30%), Positives = 64/138 (46%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CY CG+ G ++ C C+NCG SGH++++C D
Sbjct: 47 CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDC----------------KD 82
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQE 433
+R +R CY C GH++R+C +Q+ Q CY CG+ GH+ +DC Q
Sbjct: 83 PKR--ERRQHCYTCGRLGHLARDCDRQKEQK-----CYSCGKLGHIQKDCAQ-------- 127
Query: 434 RQIKCYNCNQNGHMSREC 487
+KCY C + GH++ C
Sbjct: 128 --VKCYRCGEIGHVAINC 143
Score = 77.8 bits (190), Expect = 2e-14
Identities = 33/112 (29%), Positives = 60/112 (53%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNCG+ GH++++C + K+ +R C+ CG GH++R+C +
Sbjct: 67 CYNCGRSGHIAKDCKDPKR----ERRQHCYTCGRLGHLARDCDR---------------- 106
Query: 254 DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQ 409
Q+ +CY+C + GH+ ++C + + CY+CGE GH+A +C++
Sbjct: 107 -----QKEQKCYSCGKLGHIQKDCAQVK--------CYRCGEIGHVAINCSK 145
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/92 (29%), Positives = 41/92 (44%)
Frame = +2
Query: 62 RRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYE 241
RR CY CG+ GH++R+C K+ C++CG+ GH+ ++C Q
Sbjct: 87 RRQHCYTCGRLGHLARDCDRQKEQ-------KCYSCGKLGHIQKDCAQ------------ 127
Query: 242 RRSDDRRGNQRSTECYNCHETGHMSRECPKQR 337
+CY C E GH++ C K R
Sbjct: 128 ------------VKCYRCGEIGHVAINCSKAR 147
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 100 bits (248), Expect = 4e-21
Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Frame = +2
Query: 62 RRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYE 241
R C+NC + GH S +C E KK + C+NC + GH SR+CP+ + R G+
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKE---REPRVCYNCQQPGHNSRDCPEERKpreGRNGFT 311
Query: 242 RRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDC---TQE 412
S G ++ T GS NNG G G +
Sbjct: 312 GGSSGFGGGNGGGTGFDSGLTNGF----------GSGNNGESGFGSGGFGGNSNGFGSGG 361
Query: 413 GGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 559
GG DR ER C+NC Q GH S +CP + +++ CY C + GH SRDC E
Sbjct: 362 GGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Frame = +2
Query: 140 GQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSR 319
G+R+ CFNC + GH S +CP+ + R CYNC + GH SR
Sbjct: 367 GERNNNCFNCQQPGHRSNDCPEPKKEREPR-----------------VCYNCQQPGHNSR 409
Query: 320 ECPKQRNQGSRNNGC---YKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 490
+CP++R NG + G +G + GN+ + +KC+NC GH S ECP
Sbjct: 410 DCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP 469
Query: 491 NGQSDKKCYKCNKVGHMSRDC 553
+ + C+ C + GH S +C
Sbjct: 470 --EPPRGCFNCGEQGHRSNEC 488
Score = 67.8 bits (164), Expect = 2e-11
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Frame = +2
Query: 134 GSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHM 313
GSG+ G F G++G N N G G G N HE+G
Sbjct: 169 GSGKAGGTGFGSGKAGGTG--FGGNSNSGSGFGS---------GLTNGFGSGNNHESGFG 217
Query: 314 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 493
K G N+G G G+ + GG DR ER C+NC Q GH S +CP
Sbjct: 218 GG---KSGGFGGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPE 274
Query: 494 GQSDKK---CYKCNKVGHMSRDCNE 559
+ +++ CY C + GH SRDC E
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 65.5 bits (158), Expect = 1e-10
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSD 253
CYNC + GH SR+C E +K G R+G G G GG+ +
Sbjct: 398 CYNCQQPGHNSRDCPEERKpreG-RNGFTSGFG---------------GGNDGGFGGGNA 441
Query: 254 DRRGNQRS---TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDC 403
+ GN +C+NC GH S ECP+ GC+ CGE GH + +C
Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEP------PRGCFNCGEQGHRSNEC 488
Score = 52.4 bits (124), Expect = 1e-06
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +2
Query: 68 MECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECP 202
M+C+NC +GH S EC E + CFNCGE GH S ECP
Sbjct: 453 MKCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 489
Score = 31.2 bits (69), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSG 142
C+NCG+ GH S EC K G
Sbjct: 475 CFNCGEQGHRSNECPNPAKpreG 497
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 87.4 bits (215), Expect = 3e-17
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Frame = +2
Query: 134 GSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHM 313
G G+R+ CFNC + GH S +CP+ R + CYNC + GH
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEP-----------------RKEREPRVCYNCQQPGHT 194
Query: 314 SRECPKQRNQGSRNNGCY-------KCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGH 472
SREC ++R G + G N D GG +R +KC+NC GH
Sbjct: 195 SRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEER--GPMKCFNCKGEGH 252
Query: 473 MSRECPNGQSDKKCYKCNKVGHMSRDC 553
S ECP + + C+ C + GH S +C
Sbjct: 253 RSAECP--EPPRGCFNCGEQGHRSNEC 277
Score = 77.0 bits (188), Expect = 4e-14
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Frame = +2
Query: 62 RRMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDN-RGDRRGGY 238
R C+NC + GH S +C E +K + C+NC + GH SREC + R R GG+
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKE---REPRVCYNCQQPGHTSRECTEERKpreGRTGGF 212
Query: 239 -------ERRSDDRRG---------NQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYK 370
+D G + +C+NC GH S ECP+ GC+
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEP------PRGCFN 266
Query: 371 CGENGHMARDC 403
CGE GH + +C
Sbjct: 267 CGEQGHRSNEC 277
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 38/110 (34%)
Frame = +2
Query: 344 GSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK-CYNCNQNGHMSRECP---------- 490
G RNN C+ C + GH + DC + R+ER+ + CYNC Q GH SREC
Sbjct: 154 GERNNNCFNCQQPGHRSSDCPEP----RKEREPRVCYNCQQPGHTSRECTEERKpreGRT 209
Query: 491 -----------NGQSD----------------KKCYKCNKVGHMSRDCNE 559
NG +D KC+ C GH S +C E
Sbjct: 210 GGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 57.0 bits (136), Expect = 4e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 410 EGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 559
EGG+ ER C+NC Q GH S +CP + +++ CY C + GH SR+C E
Sbjct: 148 EGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 52.4 bits (124), Expect = 1e-06
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +2
Query: 68 MECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECP 202
M+C+NC +GH S EC E + CFNCGE GH S ECP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPRG--------CFNCGEQGHRSNECP 278
Score = 31.2 bits (69), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSG 142
C+NCG+ GH S EC K G
Sbjct: 264 CFNCGEQGHRSNECPNPAKpreG 286
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 75.9 bits (185), Expect = 8e-14
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 6/160 (3%)
Frame = +2
Query: 92 DGHMSRECTENKKSG--SGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRG 265
+G+ E ++N++ G+R C NCGE GH+S+EC +
Sbjct: 548 NGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECD-------------------KP 588
Query: 266 NQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK 445
C NC + GH + +C + R C CG GH A DC Q + +
Sbjct: 589 KVPRFPCRNCEQLGHFASDCDQPR---VPRGPCRNCGIEGHFAVDCDQP-----KVPRGP 640
Query: 446 CYNCNQNGHMSRECPNG----QSDKKCYKCNKVGHMSRDC 553
C NC Q GH +++C N + + C +C + GH +C
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 65.1 bits (157), Expect = 1e-10
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Frame = +2
Query: 74 CYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQ-NDNRGDRRG----GY 238
C+NCG++GH+S+EC + K C NC + GH + +C Q RG R G+
Sbjct: 572 CHNCGEEGHISKECDKPKVPRF-----PCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGH 626
Query: 239 ERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDC 403
D+ R C NC + GH +++C +R + C +C E GH +C
Sbjct: 627 FAVDCDQPKVPRGP-CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 55.8 bits (133), Expect = 9e-08
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Frame = +2
Query: 95 GHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRR-------------GG 235
G S+ K+G G S F +SG PQ+ GD GG
Sbjct: 473 GQQSKGFGGATKNGFGGDSSNSFGKRDSGFGG---PQDQGFGDTDAPSKSGLGSFNTGGG 529
Query: 236 YERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEG 415
+ + G S+ N + G S + G R GC+ CGE GH++++C +
Sbjct: 530 AVKSAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKP- 588
Query: 416 GNDRQERQIKCYNCNQNGHMSRECPNGQSDK-KCYKCNKVGHMSRDCNE 559
+ + C NC Q GH + +C + + C C GH + DC++
Sbjct: 589 ----KVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ 633
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/88 (29%), Positives = 38/88 (43%)
Frame = +2
Query: 65 RMECYNCGKDGHMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYER 244
R C NCG +GH + +C + K G C NCG+ GH +++C
Sbjct: 615 RGPCRNCGIEGHFAVDCDQPKVP-----RGPCRNCGQEGHFAKDC--------------- 654
Query: 245 RSDDRRGNQRSTECYNCHETGHMSRECP 328
++R + + C C E GH ECP
Sbjct: 655 -QNERVRMEPTEPCRRCAEEGHWGYECP 681
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,252,898
Number of Sequences: 369166
Number of extensions: 1658829
Number of successful extensions: 10694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8166
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)