Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B10
(307 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P68586|MTBP_BPPHT Modification methylase Phi3TI (Cytosin... 33 0.21
sp||P09389_1 [Segment 1 of 2] Modification methylase SPBeta... 33 0.21
sp|P17632|MBHL_RHOGE Uptake hydrogenase large subunit (Hydr... 28 5.1
sp|Q57532|GYRA_MYCLE DNA gyrase subunit A [Contains: Mle gy... 28 5.1
sp|P31891|MBHL_RALEU Uptake hydrogenase large subunit (Hydr... 28 6.6
sp|P12636|MBHL_BRAJA Uptake hydrogenase large subunit (Hydr... 28 8.6
sp|P18636|MBHL_RHILV Uptake hydrogenase large subunit (Hydr... 28 8.6
sp|P75318|Y465_MYCPN Hypothetical protein MPN465 (P01_orf199) 28 8.6
>sp|P68586|MTBP_BPPHT Modification methylase Phi3TI (Cytosine-specific methyltransferase
Phi3TI) (M.Phi3TI)
sp|P68585|MTBP_BACSU Phi-3T prophage-derived modification methylase Phi3TI
(Cytosine-specific methyltransferase Phi3TI) (M.Phi3TI)
Length = 443
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -3
Query: 125 CSSCSF--IIRWESYRRFVKCPMCNLLPKA 42
CS+CS +I +E Y++ VKCP C + KA
Sbjct: 94 CSNCSHEHLITYEDYKKGVKCPKCEAVSKA 123
>sp||P09389_1 [Segment 1 of 2] Modification methylase SPBetaI (Cytosine-specific
methyltransferase SPBetaI) (M.SPBetaI)
Length = 143
Score = 33.1 bits (74), Expect = 0.21
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -3
Query: 125 CSSCSF--IIRWESYRRFVKCPMCNLLPKA 42
CS+CS +I +E Y++ VKCP C + KA
Sbjct: 94 CSNCSHEHLITYEDYKKGVKCPKCEAVSKA 123
>sp|P17632|MBHL_RHOGE Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit)
Length = 618
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 124 QINDHGKPSAHLHALFWVASISGL 195
Q++DH HLHAL WV +S L
Sbjct: 114 QVHDHAVHFYHLHALDWVDVVSAL 137
>sp|Q57532|GYRA_MYCLE DNA gyrase subunit A [Contains: Mle gyrA intein]
Length = 1273
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 25 NSLVRVAFGKRLHIGHF-TKRRYDSQRIIKEQLEQINDHGKP 147
NSLVR+ FGK + IG T +++S I L+ ++ HG P
Sbjct: 135 NSLVRLLFGKSIRIGDIVTGAQFNSDNPI--DLKVLDRHGNP 174
>sp|P31891|MBHL_RALEU Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit)
Length = 618
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 100 RIIKEQLEQINDHGKPSAHLHALFWVASISGL 195
R I + Q++DH HLHAL WV +S L
Sbjct: 106 REIMAKTLQVHDHAVHFYHLHALDWVDVMSAL 137
>sp|P12636|MBHL_BRAJA Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit)
Length = 596
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 91 DSQRIIKEQLEQINDHGKPSAHLHALFWVASISGL 195
+S R + + Q++DH HLHAL WV +S L
Sbjct: 103 NSIRNLMQLALQVHDHVVHFYHLHALDWVDVVSAL 137
>sp|P18636|MBHL_RHILV Uptake hydrogenase large subunit (Hydrogenlyase) (Membrane-bound
hydrogenase large subunit)
Length = 596
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 91 DSQRIIKEQLEQINDHGKPSAHLHALFWVASISGL 195
+S R + + Q++DH HLHAL WV +S L
Sbjct: 103 NSIRNLMQLALQVHDHVVHFYHLHALDWVDVVSAL 137
>sp|P75318|Y465_MYCPN Hypothetical protein MPN465 (P01_orf199)
Length = 199
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 167 SACKCALGL-PWSLICSSCSFIIRWES 90
SAC+ L + PW+ ICS +F W S
Sbjct: 46 SACRIDLSVFPWAFICSPWNFCSTWSS 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,276,042
Number of Sequences: 369166
Number of extensions: 678762
Number of successful extensions: 1634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 68,354,980
effective HSP length: 70
effective length of database: 55,423,530
effective search space used: 1718129430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)