Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_B04
(301 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 154 8e-38
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 142 2e-34
sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 142 2e-34
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 141 4e-34
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 141 4e-34
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 141 5e-34
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 140 7e-34
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 137 6e-33
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 136 2e-32
sp|P49690|RL23_ARATH 60S ribosomal protein L23 134 5e-32
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 154 bits (388), Expect = 8e-38
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLP+A VGDM VCSVKKGKPELRKKVLQGVVIRQRK ++RKDGT I FEDNAGV+VN
Sbjct: 48 RLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 142 bits (359), Expect = 2e-34
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VN
Sbjct: 48 RLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23
Length = 140
Score = 142 bits (359), Expect = 2e-34
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLP+A VGDM V SVKKGKPELRKKVLQ VV+RQRK Y+R DG+ I FEDNAGV+VN
Sbjct: 48 RLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPV KECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVTKECADLWPR 131
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 141 bits (356), Expect = 4e-34
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLP+A VGDMV+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VN
Sbjct: 48 RLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 141 bits (356), Expect = 4e-34
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQRK ++R+DG I FEDNAGV+VN
Sbjct: 48 RLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 141 bits (355), Expect = 5e-34
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
+LNRLPAA VGDMV+ +VKKGKPELRKKV VVIRQRK Y+RKDG + FEDNAGV+VN
Sbjct: 48 QLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 140 bits (354), Expect = 7e-34
Identities = 66/84 (78%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLPAA VGDM V +VKKGKPELRKKV+ VVIRQRK ++R+DG + FEDNAGV+VN
Sbjct: 48 RLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
NKGEMKGSAITGPVAKECAD+WP+
Sbjct: 108 NKGEMKGSAITGPVAKECADLWPR 131
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 137 bits (346), Expect = 6e-33
Identities = 66/83 (79%), Positives = 72/83 (86%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLPAA VGDMV+ +VKKGKP LRKKV VVIRQRK Y+RKDG + FEDNAGV+VN
Sbjct: 48 RLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWP 250
NKGEMKGSAITGPV KECAD+WP
Sbjct: 108 NKGEMKGSAITGPVXKECADLWP 130
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 136 bits (342), Expect = 2e-32
Identities = 61/84 (72%), Positives = 75/84 (89%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLPAA+ GDMV+ +VKKGKP+LRKK++ +V+RQRK ++RKDG + FEDNAGV+VN
Sbjct: 47 RLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVN 106
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
KGEMKGSAITGPVAKECAD+WP+
Sbjct: 107 PKGEMKGSAITGPVAKECADLWPR 130
>sp|P49690|RL23_ARATH 60S ribosomal protein L23
Length = 140
Score = 134 bits (338), Expect = 5e-32
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +2
Query: 2 RLNRLPAAAVGDMVVCSVKKGKPELRKKVLQGVVIRQRKLYKRKDGTVIQFEDNAGVLVN 181
RLNRLP+A VGDMV+ +VKKGKP+LRKKVL V++RQRK ++RKDG + FEDNAGV+VN
Sbjct: 48 RLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVN 107
Query: 182 NKGEMKGSAITGPVAKECADMWPK 253
KGEMKGSAITGP+ KECAD+WP+
Sbjct: 108 PKGEMKGSAITGPIGKECADLWPR 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,186,602
Number of Sequences: 369166
Number of extensions: 623207
Number of successful extensions: 1722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)