Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A22
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16586|SGCA_HUMAN Alpha-sarcoglycan precursor (Alpha-SG)... 30 2.3
sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromos... 28 5.0
>sp|Q16586|SGCA_HUMAN Alpha-sarcoglycan precursor (Alpha-SG) (Adhalin) (50 kDa
dystrophin-associated glycoprotein) (50DAG)
(Dystroglycan 2)
Length = 387
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 117 EDQQQPNHPPL*ALF---LSHKTFQSISNGVVVPQGLHVT 7
E QQ HP + +F L H+TF S+ V VP +H+T
Sbjct: 22 EAQQTTLHPLVGRVFVHTLDHETFLSLPEHVAVPPAVHIT 61
>sp|Q9P6S3|YNL4_SCHPO Hypothetical protein C27.04 in chromosome II
Length = 1052
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 31 NNTIRNRLESFMREKESLERRV 96
NN ++NRLE+ RE E L+ RV
Sbjct: 531 NNALQNRLEALTRENELLQSRV 552
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,651,129
Number of Sequences: 369166
Number of extensions: 357977
Number of successful extensions: 962
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)