Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A06
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 85 6e-17
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 82 3e-16
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 80 1e-15
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 80 1e-15
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 74 1e-13
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 74 1e-13
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 74 1e-13
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 71 7e-13
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 71 7e-13
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 70 1e-12
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 84.7 bits (208), Expect = 6e-17
Identities = 47/114 (41%), Positives = 70/114 (61%)
Frame = +1
Query: 7 TRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSDK 186
T D R+L + +K GEVIK+ + + I NEGMP YK+P E+G +IIQF VVFPE +L +K
Sbjct: 280 TLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEK 339
Query: 187 LNKLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
L +L ++LPP Q D+M + E L ++P N +S ++ E + D +
Sbjct: 340 LPQLEALLPPRQKVRITDDMDQVE---LKEFNP---NEQSWRQHREAYEEDDEE 387
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 82.4 bits (202), Expect = 3e-16
Identities = 45/106 (42%), Positives = 66/106 (62%)
Frame = +1
Query: 7 TRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSDK 186
T D RIL + +K GEVIK+ + R + +EGMP YK+P E+G LIIQF V+FPE ++L +K
Sbjct: 280 TLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEK 339
Query: 187 LNKLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDRYHE 324
L +L ++LPP Q D+M + E L + P+ N + +E
Sbjct: 340 LPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQNWRQHREAYE 382
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 80.5 bits (197), Expect = 1e-15
Identities = 42/115 (36%), Positives = 65/115 (56%)
Frame = +1
Query: 4 TTRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSD 183
+T D R + + + PG+++K+ + + + NEGMP Y+ P+E+G LII+F V FPEN FL D
Sbjct: 278 STLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPD 337
Query: 184 KLNKLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
KL+ L +LP + D M + E L +DP+ + R H Y+ D
Sbjct: 338 KLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYEDD 384
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 80.5 bits (197), Expect = 1e-15
Identities = 42/115 (36%), Positives = 65/115 (56%)
Frame = +1
Query: 4 TTRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSD 183
+T D R + + + PG+++K+ + + + NEGMP Y+ P+E+G LII+F V FPEN FL D
Sbjct: 278 STLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPD 337
Query: 184 KLNKLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
KL+ L +LP + D M + E L +DP+ + R H Y+ D
Sbjct: 338 KLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYNGEAYEDD 384
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 73.9 bits (180), Expect = 1e-13
Identities = 40/101 (39%), Positives = 61/101 (60%)
Frame = +1
Query: 13 DKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSDKLN 192
D R + V+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL+
Sbjct: 290 DGRQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLS 349
Query: 193 KLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDR 315
+L +LP ++ + E EE L +D + + Q R
Sbjct: 350 ELEDLLPSRPEVPNI--IGETEEVELQEFDSTRGSGGGQRR 388
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 73.9 bits (180), Expect = 1e-13
Identities = 40/101 (39%), Positives = 61/101 (60%)
Frame = +1
Query: 13 DKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSDKLN 192
D R + V+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL+
Sbjct: 290 DARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLS 349
Query: 193 KLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDR 315
+L +LP ++ + E EE L +D + + Q R
Sbjct: 350 ELEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGGGQRR 388
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 73.9 bits (180), Expect = 1e-13
Identities = 40/101 (39%), Positives = 61/101 (60%)
Frame = +1
Query: 13 DKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSDKLN 192
D R + V+ PG+VI+ R + EGMP+Y++PFE+G L I+FDV FPENN++ DKL+
Sbjct: 290 DARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLS 349
Query: 193 KLRSILPPSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDR 315
+L +LP ++ + E EE L +D + + Q R
Sbjct: 350 ELEDLLPSRPEVPNV--IGETEEVELQEFDSTRGSGGGQRR 388
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 71.2 bits (173), Expect = 7e-13
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = +1
Query: 4 TTRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSD 183
T D R L +++ PGEV+K +++AI++EGMP Y+ PF +G L IQF V FP++ L D
Sbjct: 271 THLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFPDS--LTPD 328
Query: 184 KLNKLRSILPPSQFSSSLD-NMKEPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
+ + S+LP S S D + E EE +H D ++ + ++ YD D
Sbjct: 329 QCKVIESVLPRSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQHAQEAYDED 382
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 71.2 bits (173), Expect = 7e-13
Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Frame = +1
Query: 4 TTRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSD 183
T D R L +++ PGEVIK +++ I++EGMP Y+ PF +G L I F V FP++ L D
Sbjct: 292 THLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFPDS--LTPD 349
Query: 184 KLNKLRSILPPSQFSSSLDNMK--EPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
+ L S+L PS+ +S L +M+ E EE +H D ++ + ++ + YD D
Sbjct: 350 QCKALESVL-PSRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQHQQAQEAYDED 403
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = +1
Query: 4 TTRDKRILFVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGTLIIQFDVVFPENNFLPSD 183
T DKR L +++KPGEV+K Y+AI +EGMP Y+ PF +G L I F V FPE+ L D
Sbjct: 293 THLDKRQLLIKSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFPES--LSPD 350
Query: 184 KLNKLRSILP-PSQFSSSLDNMKEPEECVLHPYDPSMANSKSQDRYHERHHVYDSD 348
+ + ++LP P++ + S + + EE LH + + + + + YD D
Sbjct: 351 QTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVN---IEDEMKRKAQAQREAYDDD 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,073,221
Number of Sequences: 369166
Number of extensions: 788875
Number of successful extensions: 1847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)