Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_A01
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 203 3e-52
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 203 3e-52
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 202 3e-52
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 202 4e-52
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 199 5e-51
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 196 4e-50
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 195 5e-50
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 193 3e-49
sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein) 184 9e-47
sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein) 181 1e-45
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 203 bits (516), Expect = 3e-52
Identities = 99/176 (56%), Positives = 129/176 (73%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 85 EDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 144
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 145 QIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH 204
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 205 DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 260
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 203 bits (516), Expect = 3e-52
Identities = 99/176 (56%), Positives = 129/176 (73%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 89 EDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 149 QIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ +++ +TG+ +ER DG+EPP+Q SV
Sbjct: 209 DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV 264
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 202 bits (515), Expect = 3e-52
Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 89 EDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 149 QIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ ++ +TG+ +ER DG+EPP+Q SV
Sbjct: 209 DVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPVQESV 264
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 202 bits (514), Expect = 4e-52
Identities = 100/176 (56%), Positives = 126/176 (71%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 89 EDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 149 QIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITSTGEIIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ + A TG +ER DG+EPP+Q SV
Sbjct: 209 DVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPVQESV 264
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 199 bits (505), Expect = 5e-51
Identities = 98/178 (55%), Positives = 125/178 (70%), Gaps = 6/178 (3%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKMCSMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 89 EDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E+ + D+KEVV KL DS+GKDI K C I+PL
Sbjct: 149 QVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITS------TGEIIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ + TG +ER DG+EPPIQ +V
Sbjct: 209 DVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYEPPIQETV 266
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 196 bits (497), Expect = 4e-50
Identities = 100/177 (56%), Positives = 127/177 (71%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
E+VQG LT+F GM LT DK+CSMVKKWQT IE DVKTTD + LRVF I FTKK +
Sbjct: 89 EEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q+KK YAQ Q+K+IR M E+++ E+SS D+KEVV KL DSIGKDI K C I+PL
Sbjct: 149 QVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQGIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSAT----AITST-GEIIERPDGHEPPIQTSV 520
D + KVKV++KPK D+ KLM+LHG+ +T +TS GE ++R DG+EPP+ +V
Sbjct: 209 DVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYEPPVLQNV 265
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 195 bits (496), Expect = 5e-50
Identities = 98/176 (55%), Positives = 124/176 (70%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG CLT+F GM LT DKM SMVKKWQT IE DVKTTD + LR+F + FTKK +
Sbjct: 89 EDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNN 148
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q++K +YAQ QQ++ IR M E++ E + D+KEVV KL DSIGKDI K C I+PL
Sbjct: 149 QIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH 208
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGE----IIERPDGHEPPIQTSV 520
D VRKVK+++KPK +L KLM+LHG+ A +G+ +ER DG+EPP+Q SV
Sbjct: 209 DVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYEPPVQESV 264
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 193 bits (490), Expect = 3e-49
Identities = 95/172 (55%), Positives = 124/172 (72%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQG LT+F M +T DK+CS+VKKW T IE VKTTD + LRVFVIAFTKK+
Sbjct: 87 EDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVN 146
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
Q+KK +Y + +I+ IR M I E++ CD+KEVV KL DSIGKDI K CS ++PLQ
Sbjct: 147 QVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQ 206
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSATAITSTGEIIERPDGHEPPIQTSV 520
+ +RKVK+I++PK+DL +L DLHGDS T + + GE ++RPD +EPP+Q V
Sbjct: 207 EVYIRKVKIIKRPKVDLGRLHDLHGDSIT-VGADGEKVDRPDDYEPPVQQEV 257
>sp|P52813|RS3A_ANOGA 40S ribosomal protein S3a (C3 protein)
Length = 269
Score = 184 bits (468), Expect = 9e-47
Identities = 98/178 (55%), Positives = 119/178 (66%), Gaps = 6/178 (3%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
E V G LT+F GM LTTDK+ SMV KWQT IEC DVKTTD F LRVF I FT K S
Sbjct: 92 ESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSM 151
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
+K YAQ QIK+IR M +I EI+S D+K VV+KL DSI KDI K C ++PL
Sbjct: 152 SQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLH 211
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSA--TAITSTGE----IIERPDGHEPPIQTSV 520
D +RKVKV++KP+ DL+ LM+LHGD A STG ++ RP+G+EPP+Q SV
Sbjct: 212 DVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVVRPEGYEPPVQASV 269
>sp|P55830|RS3A_DROME 40S ribosomal protein S3a (C3 protein)
Length = 268
Score = 181 bits (459), Expect = 1e-45
Identities = 88/177 (49%), Positives = 117/177 (66%), Gaps = 5/177 (2%)
Frame = +2
Query: 5 EDVQGNQCLTSFKGMQLTTDKMCSMVKKWQTTIECFADVKTTDNFHLRVFVIAFTKKAST 184
EDVQ L +F GM LTTDK SMVKKWQT IE + KT D + LRVF I FT K
Sbjct: 92 EDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQ 151
Query: 185 QLKKHTYAQAQQIKSIRDIMREVINAEISSCDIKEVVKKLCIDSIGKDIAKKCSYIFPLQ 364
+K YAQ Q++ IR M ++I E+S D+K++V KL +DSI KDI K C I+PL
Sbjct: 152 SQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLH 211
Query: 365 DCCVRKVKVIRKPKMDLTKLMDLHGDSA-----TAITSTGEIIERPDGHEPPIQTSV 520
D +RKVKV++KP+ D++KL++LHGD ++S G +I+RP+G+EPP+Q SV
Sbjct: 212 DVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYEPPVQESV 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,633,427
Number of Sequences: 369166
Number of extensions: 1150924
Number of successful extensions: 2889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)