Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P18
(118 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 39 0.005
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 35 0.041
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 31 0.78
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 30 1.3
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 29 3.0
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 28 5.1
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 GFGRAQSDNGDFVIVGQYKPAGNVI--GHFKENVLSP 109
G G+A + +G +V +Y PAGNV+ G F+ENVL P
Sbjct: 116 GVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 35.4 bits (80), Expect = 0.041
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 GFGRAQSDNGDFVIVGQYKPAGNVI--GHFKENVLSP 109
G G+A + +G +V +Y PAGN++ G F+ENV P
Sbjct: 116 GVGKASASDGSSFVVARYFPAGNIVNQGFFEENVPPP 152
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 32 GDFVIVGQYKPAGNVIGHFKENVL 103
GD++I YK AGNVIG F +NV+
Sbjct: 304 GDYIICS-YKAAGNVIGEFADNVM 326
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 GFGRAQSDNGDFVIVGQYKPAGNVIG 82
G R Q +NG +++ Y P GNVIG
Sbjct: 139 GCARVQCNNGGYIVSCNYDPPGNVIG 164
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 29.3 bits (64), Expect = 3.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 GFGRAQSDNGDFVIVGQYKPAGNVIG 82
G R + +NG +V+ Y P GNVIG
Sbjct: 139 GCARVKCNNGGYVVSCNYDPPGNVIG 164
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 5 GFGRAQSDNGDFVIVGQYKPAGNVIG 82
G R +S+NG F I Y P GN IG
Sbjct: 130 GCARVRSNNGWFFITCNYDPPGNFIG 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,481,286
Number of Sequences: 369166
Number of extensions: 204903
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 68,354,980
effective HSP length: 12
effective length of database: 66,138,160
effective search space used: 1719592160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)