Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P07
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 436 e-122
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 436 e-122
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 432 e-121
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 424 e-118
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 409 e-114
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 409 e-114
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 392 e-109
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 392 e-109
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 349 5e-96
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 348 8e-96
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 436 bits (1121), Expect = e-122
Identities = 207/276 (75%), Positives = 233/276 (84%)
Frame = +3
Query: 24 KNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAE 203
K ++ +WPIRHG+VEDWDL ERFMEQ IFK LRAEPEDHYFLLTEPPLNTPENRE+TAE
Sbjct: 69 KPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128
Query: 204 IMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGS 383
IMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +GYVIGS
Sbjct: 129 IMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGS 188
Query: 384 AIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSD 563
IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK +KERYSYVCPD+ KEF KYD+D
Sbjct: 189 CIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTD 248
Query: 564 PEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCP 743
KWIK + + +FS DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CP
Sbjct: 249 GSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCP 308
Query: 744 IDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
ID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD
Sbjct: 309 IDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVD 344
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 436 bits (1121), Expect = e-122
Identities = 207/276 (75%), Positives = 233/276 (84%)
Frame = +3
Query: 24 KNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAE 203
K ++ +WPIRHG+VEDWDL ERFMEQ IFK LRAEPEDHYFLLTEPPLNTPENRE+TAE
Sbjct: 69 KPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128
Query: 204 IMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGS 383
IMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +GYVIGS
Sbjct: 129 IMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGS 188
Query: 384 AIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSD 563
IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK +KERYSYVCPD+ KEF KYD+D
Sbjct: 189 CIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTD 248
Query: 564 PEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCP 743
KWIK + + +FS DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CP
Sbjct: 249 GSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCP 308
Query: 744 IDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
ID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD
Sbjct: 309 IDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVD 344
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 432 bits (1110), Expect = e-121
Identities = 205/276 (74%), Positives = 232/276 (84%)
Frame = +3
Query: 24 KNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAE 203
K ++ +WPIRHG+VEDWDL ERFMEQ IFK LRAEPEDHYFLLTEPPLNTPENRE+TAE
Sbjct: 69 KPPYATKWPIRHGIVEDWDLMERFMEQIIFKYLRAEPEDHYFLLTEPPLNTPENREYTAE 128
Query: 204 IMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGS 383
IMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGTVIDSGDGVTHVIPV +GYVIGS
Sbjct: 129 IMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGS 188
Query: 384 AIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSD 563
IKHIPIAGRDIT+F QQLLRERE IPP+ S+E AK +KER+SYVCPD+ KEF KYD+D
Sbjct: 189 CIKHIPIAGRDITYFTQQLLREREVGIPPEQSLETAKAVKERFSYVCPDLVKEFNKYDTD 248
Query: 564 PEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCP 743
KWIK + + +F+ DVGYE+FLGPE+FF PEF N DF IS+VVD VIQ+CP
Sbjct: 249 GSKWIKQYTGINAITKKEFTIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCP 308
Query: 744 IDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
ID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD
Sbjct: 309 IDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVD 344
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 424 bits (1091), Expect = e-118
Identities = 200/273 (73%), Positives = 232/273 (84%)
Frame = +3
Query: 33 FSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAEIMF 212
+S+++P+RHG+VEDWDL ERF+EQ +FK LRAEPEDHYFLLTEPPLNTPENRE+TAEIMF
Sbjct: 72 YSIKYPVRHGLVEDWDLMERFLEQCVFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMF 131
Query: 213 ETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGSAIK 392
ETFNVPGLYIAVQAVLALAASW SR A ERTLTG V+DSGDGVTHVIPV +GYVIGS IK
Sbjct: 132 ETFNVPGLYIAVQAVLALAASWASRSAEERTLTGIVVDSGDGVTHVIPVAEGYVIGSCIK 191
Query: 393 HIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSDPEK 572
HIPIAGR+IT FIQ LLRERE IPP+ S+E AK IKE++ Y+CPDIAKEFAKYD++P K
Sbjct: 192 HIPIAGRNITSFIQSLLREREVGIPPEQSLETAKAIKEKHCYICPDIAKEFAKYDTEPGK 251
Query: 573 WIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDS 752
WI++ + F+ DVGYE+FLGPE+FF PEF N DF +S++VD VIQ+CPID
Sbjct: 252 WIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPEFSNPDFTIPLSEIVDNVIQNCPIDV 311
Query: 753 RRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
RRPLYNNIVLSGGS+MFK RR+QRDIK+ VD
Sbjct: 312 RRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVD 344
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 409 bits (1051), Expect = e-114
Identities = 193/275 (70%), Positives = 227/275 (82%)
Frame = +3
Query: 27 NDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAEI 206
++++V++PIRHG+VEDWDL ER+ EQ IFK LRAEPEDH+FLLTEPPLNTPENRE+TAEI
Sbjct: 78 SNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEI 137
Query: 207 MFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGSA 386
MFE+FNVPGLYIAVQAVLAL ASW SR A++R+LTG VIDSGDGVTH IPV DGYVIGS
Sbjct: 138 MFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIPVADGYVIGSC 197
Query: 387 IKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSDP 566
IKHIPIAGRDIT+FIQ LLRERE IP + S E AK IKE++ YVCPD+ KEF KYD+D
Sbjct: 198 IKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFVKYDTDS 257
Query: 567 EKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPI 746
KW++++ S FS DVGYE+FLGPE+FF PEF N DF T ISD +DT+IQ CPI
Sbjct: 258 SKWLRTYDGINSITKRPFSVDVGYERFLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPI 317
Query: 747 DSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
D RR LY NIVLSGGS+MFK R++QRD+K++ D
Sbjct: 318 DVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSD 352
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 409 bits (1050), Expect = e-114
Identities = 192/274 (70%), Positives = 226/274 (82%)
Frame = +3
Query: 30 DFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAEIM 209
+++V++PIRHG+VEDWDL ER+ EQ IFK LRAEPEDH+FLLTEPPLNTPENRE+TAEIM
Sbjct: 78 NYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIM 137
Query: 210 FETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGSAI 389
FE+FNVPGLYIAVQAVLAL ASW SR ANER+LTG VIDSGDGVTH IPV DGYVIGS I
Sbjct: 138 FESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCI 197
Query: 390 KHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSDPE 569
KHIPIAGRDIT+FIQ LLR+RE IP + S E AK IKE++ YVCPD+ KEF KYD+D
Sbjct: 198 KHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKMIKEKFCYVCPDVMKEFVKYDTDAA 257
Query: 570 KWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPID 749
KW++++ S F+ DVGYE+FLGPE+FF PEF N +F T ISD +DT+IQ CPID
Sbjct: 258 KWLRTYDGINSITKKPFNVDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPID 317
Query: 750 SRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
RR LY NIVLSGGS+MFK R++QRD+K++ D
Sbjct: 318 VRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSD 351
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 392 bits (1008), Expect = e-109
Identities = 186/282 (65%), Positives = 227/282 (80%)
Frame = +3
Query: 9 QAMEGKNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENR 188
+A+ + + P++HG +E+W E++ E +FK LR EPEDHYFLLTEPPLN PENR
Sbjct: 65 EAIANSKTYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENR 124
Query: 189 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 368
EFTAEIMFETFNVPGLYIAVQAVLALAASWTS+ A E+TLTGTVIDSGDGVTHVIP+ +G
Sbjct: 125 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNA-EKTLTGTVIDSGDGVTHVIPISEG 183
Query: 369 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 548
YVIGS+IKHIPIAGRDI+ ++QQ++RERE IPP S+E AK++KE+YSYVCPDI KEF
Sbjct: 184 YVIGSSIKHIPIAGRDISSYVQQIMREREPNIPPAESLEIAKRVKEQYSYVCPDIVKEFG 243
Query: 549 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 728
KYDS+P+KWIK+ S FS+DVGYE+FLGPE+FF PE ++D+ T + VVD
Sbjct: 244 KYDSEPDKWIKTINAQDSVTKKPFSYDVGYERFLGPELFFNPEIASSDYLTPLPKVVDDT 303
Query: 729 IQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDF 854
IQSCPID RR LY NIVLSGGS+MFK +R+QRD+K+ VD+
Sbjct: 304 IQSCPIDCRRGLYKNIVLSGGSTMFKDFGKRLQRDVKRSVDY 345
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 392 bits (1006), Expect = e-109
Identities = 187/282 (66%), Positives = 224/282 (79%)
Frame = +3
Query: 9 QAMEGKNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENR 188
+A E + + P+RHG VE+W E+F E IFK LR EPEDH+FLLTEPPLN PENR
Sbjct: 72 EAYENSKVYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPEDHHFLLTEPPLNAPENR 131
Query: 189 EFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDG 368
E+TAEIMFETFNVPGLYIAVQAVLALAASWTS+ E+TLTGTVIDSGDGVTHVIPV +G
Sbjct: 132 EYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQVTEKTLTGTVIDSGDGVTHVIPVAEG 191
Query: 369 YVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFA 548
YVIGS+IKHIP+AGRDIT F+ QLLRER IPP ++E AK+IKE +SYVCPDI KEF
Sbjct: 192 YVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPPAETLEVAKRIKETFSYVCPDIVKEFK 251
Query: 549 KYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTV 728
KYD++P+KW K+++ S ++ DVGYE+FLGPE+FF PE ++DF T + VVD
Sbjct: 252 KYDTEPDKWFKTYEGIESVGKKPYNVDVGYERFLGPEIFFNPEIFSSDFLTPLPKVVDET 311
Query: 729 IQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDF 854
IQSCPID+RR LY NIVLSGGS+MFK +R+QRDIK+ VD+
Sbjct: 312 IQSCPIDTRRGLYKNIVLSGGSTMFKDFGKRLQRDIKRAVDY 353
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 349 bits (896), Expect = 5e-96
Identities = 176/283 (62%), Positives = 212/283 (74%)
Frame = +3
Query: 3 EAQAMEGKNDFSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPE 182
EA A + + +PIRHG +E+WD ERF +IFK LR EPEDH+FLLTEPPLN PE
Sbjct: 87 EAVAAANGPGYGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEPEDHHFLLTEPPLNPPE 146
Query: 183 NREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVV 362
NRE TAEI FE+FN GLYIAVQAVLALAASWTS +R+LTGTVIDSGDGVTHVIPV
Sbjct: 147 NRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGTVIDSGDGVTHVIPVA 206
Query: 363 DGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKE 542
+GYVIGS+IK IPIAGRDIT+F+Q LLR+R PD S++ A++IKE Y YVCPDI KE
Sbjct: 207 EGYVIGSSIKSIPIAGRDITYFVQSLLRDRG---EPDSSLKTAQEIKEEYCYVCPDIVKE 263
Query: 543 FAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVD 722
FAKYD D +++K + + DVGYE+F+ PE+FF PE ++DF T + VVD
Sbjct: 264 FAKYDRDRSRFLKHTITQPGGR--QVTVDVGYERFMAPEIFFNPEIYSSDFLTPLPVVVD 321
Query: 723 TVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
VIQS PID RR LY NIVLSGGS+++K RR+QRDIK++VD
Sbjct: 322 GVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQLVD 364
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 348 bits (894), Expect = 8e-96
Identities = 175/273 (64%), Positives = 207/273 (75%)
Frame = +3
Query: 33 FSVRWPIRHGVVEDWDLHERFMEQAIFKMLRAEPEDHYFLLTEPPLNTPENREFTAEIMF 212
+S+ +PIRHG VE+WD ERF E +IFK LR EPEDH+FLLTEPPLN PENRE AEI F
Sbjct: 110 YSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPEDHFFLLTEPPLNPPENREQVAEIFF 169
Query: 213 ETFNVPGLYIAVQAVLALAASWTSRPANERTLTGTVIDSGDGVTHVIPVVDGYVIGSAIK 392
E+FN GLYIAVQAVLALAASWTS +R+LTGTVIDSGDGVTHVIPV +GYVIGSAIK
Sbjct: 170 ESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVIDSGDGVTHVIPVAEGYVIGSAIK 229
Query: 393 HIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQIKERYSYVCPDIAKEFAKYDSDPEK 572
+IPIAGRDIT FIQ LLRER D S+ A++IK+ Y YVCPDI KEF K+D DP K
Sbjct: 230 NIPIAGRDITLFIQSLLRERGEA---DTSLRTAEKIKQEYCYVCPDIVKEFNKFDKDPSK 286
Query: 573 WIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDS 752
+ + + K D+GYE+FL PE+FF PE ++DF T + VVD IQ+CPID
Sbjct: 287 FAQ-FVVENQEKTRRKVVDIGYERFLAPEIFFNPEIASSDFLTPLPTVVDQTIQACPIDV 345
Query: 753 RRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVD 851
R+ LYNNIVLSGGS+MFK RR+QRD+K +V+
Sbjct: 346 RKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVN 378
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,078,743
Number of Sequences: 369166
Number of extensions: 2333246
Number of successful extensions: 8068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7216
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)