Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P03
(495 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P66898|THD1_MYCBO Probable threonine dehydratase biosynt... 34 0.22
sp|Q02145|THD1_LACLA Threonine dehydratase biosynthetic (Th... 33 0.28
sp|Q9X7F1|THD1_MYCLE Probable threonine dehydratase biosynt... 32 0.63
sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic (Th... 32 0.82
sp|Q9XSB5|ESR2_BOVIN Estrogen receptor beta (ER-beta) 31 1.4
sp|P59644|PI5PA_MOUSE Phosphatidylinositol 4,5-bisphosphate... 31 1.8
sp|Q7WJP7|ILVD2_BORBR Dihydroxy-acid dehydratase 2 (DAD 2) 31 1.8
sp|Q9TU15|ESR2_SHEEP Estrogen receptor beta (ER-beta) 30 2.4
sp|P27742|ACVS_EMENI N-(5-amino-5-carboxypentanoyl)-L-cyste... 30 2.4
sp|Q59S66|IPL1_CANAL Spindle assembly checkpoint kinase (Au... 30 3.1
>sp|P66898|THD1_MYCBO Probable threonine dehydratase biosynthetic (Threonine deaminase)
sp|P66897|THD1_MYCTU Probable threonine dehydratase biosynthetic (Threonine deaminase)
Length = 429
Score = 33.9 bits (76), Expect = 0.22
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 2 GATALAGIM-AGLLPELENKTVVVALCGGNIDTTVFGRCIERGLAFDGRLIRFLAVVSDR 178
GA ++AG++ A + P TVV + GGN D + +G +ER L G FL
Sbjct: 299 GALSVAGLLEADIEP---GSTVVCLISGGNNDVSRYGEVLERSLVHLGLKHYFLVDFPQE 355
Query: 179 PGGIAE-LTGILSDN 220
PG + L +L N
Sbjct: 356 PGALRRFLDDVLGPN 370
>sp|Q02145|THD1_LACLA Threonine dehydratase biosynthetic (Threonine deaminase)
Length = 416
Score = 33.5 bits (75), Expect = 0.28
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 2 GATALAGIMAGLLPELENKTVVVALCGGNIDTTVFGRCIERGLAFDGRLIRFLAVVSDRP 181
GAT++A + + E++ K +V + GGN D + ER L ++G F+ RP
Sbjct: 285 GATSVAALEL-IKDEIKGKNIVCIISGGNNDISRMQEIEERALVYEGLKHYFVINFPQRP 343
Query: 182 GGI 190
G +
Sbjct: 344 GAL 346
>sp|Q9X7F1|THD1_MYCLE Probable threonine dehydratase biosynthetic (Threonine deaminase)
Length = 427
Score = 32.3 bits (72), Expect = 0.63
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 GATALAGIMAGLLPELE-NKTVVVALCGGNIDTTVFGRCIERGLAFDGRLIRFLAVVSDR 178
GA ++AG++ ++E TVV + GGN D +G +ER L G FL +
Sbjct: 296 GALSVAGLLE---TDIEPGSTVVCLISGGNNDVLRYGEVLERSLIHLGLKHYFLVDFPQK 352
Query: 179 PGGI 190
PG +
Sbjct: 353 PGAL 356
>sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic (Threonine deaminase)
Length = 415
Score = 32.0 bits (71), Expect = 0.82
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 44 ELENKTVVVALCGGNIDTTVFGRCIERGLAFDGRLIRFLAVVSDRPGGIAE 196
E++ KTVV L GGN D ER L ++G F+ R G + E
Sbjct: 297 EIKGKTVVCVLSGGNNDIGRMQEMRERSLIYEGLQHYFIIQFPQRAGALKE 347
>sp|Q9XSB5|ESR2_BOVIN Estrogen receptor beta (ER-beta)
Length = 527
Score = 31.2 bits (69), Expect = 1.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 219 LSLRIPVNSAIPPGRSLTTAKNLINRPSNAKPLSIHLPKTVVSILPPQS 73
++ IP NS PGR T+ L P + PL+IH +V+ P +S
Sbjct: 54 MNYSIPNNSEDGPGRQTTSPNVLWPTPGHLSPLAIHCQPSVLYAEPQKS 102
>sp|P59644|PI5PA_MOUSE Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A
Length = 1003
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = -1
Query: 231 ILTPLSLRIPVNSAIPPGRSLTTAKNLINRPSNAKPLSIHLPKTVVSILPPQSATTTVLF 52
+L PLS+ PP S AK++ +A S P VSIL P+S V+
Sbjct: 85 VLAPLSIAGEQKRPPPPHSSNRAAKSVGQLVVSAAAASKPPPVASVSILAPKSLGQLVIS 144
Query: 51 SSSGNKPAIIPANAV 7
+S+ +P+ P +V
Sbjct: 145 ASAMPRPSPAPLGSV 159
>sp|Q7WJP7|ILVD2_BORBR Dihydroxy-acid dehydratase 2 (DAD 2)
Length = 570
Score = 30.8 bits (68), Expect = 1.8
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 74 LCGGNIDTTVF---GRCIERGLAF----DGRLIRFLAVVSDRPGGIAELTGILSDNGVSI 232
L GG+ID +V GR + LA DG+++R GG+A L G LS +G +
Sbjct: 334 LDGGHIDGSVLTLDGRTLAEALADTPAPDGKVVRACGQALHPTGGVAVLKGNLSPDGALL 393
Query: 233 K 235
K
Sbjct: 394 K 394
>sp|Q9TU15|ESR2_SHEEP Estrogen receptor beta (ER-beta)
Length = 527
Score = 30.4 bits (67), Expect = 2.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 219 LSLRIPVNSAIPPGRSLTTAKNLINRPSNAKPLSIHLPKTVVSILPPQS 73
++ IP NS PGR T+ L P + PL+IH +++ P +S
Sbjct: 54 MNYSIPNNSEDGPGRQTTSPNVLWPTPGHLSPLAIHCQSSLLYAEPQKS 102
>sp|P27742|ACVS_EMENI N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
(Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
synthetase) (ACV synthetase) (ACVS)
Length = 3770
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 259 PSSFVKYIF-DTNSIVTQNSSQFSNSSRPIANYSQKSYQSSVKCQTSFNTSPKNRCINIT 83
P ++YI DT++I + + + + + +A S + Y+S + QT N S N + T
Sbjct: 1497 PDDRIRYILEDTSAIAVISDACYLSRIQELAGESVRLYRSDISTQTDGNWSVSNPAPSST 1556
Query: 82 ST 77
ST
Sbjct: 1557 ST 1558
>sp|Q59S66|IPL1_CANAL Spindle assembly checkpoint kinase (Aurora kinase)
Length = 530
Score = 30.0 bits (66), Expect = 3.1
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 229 TNSIVTQNSSQFSNSSRPIANYS--QKSYQSSVKCQTSFNTSPKNRCINITSTKCNNNCL 56
T+ T ++SQ+ +S+ A++S S + + QTS +T+PK R + NNN +
Sbjct: 140 TSHYRTTSTSQYKSSANKDASHSLITSSKRKTSTKQTSESTNPKRRTTTTATQNTNNNKI 199
Query: 55 I 53
+
Sbjct: 200 L 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,555,977
Number of Sequences: 369166
Number of extensions: 990260
Number of successful extensions: 3546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3541
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)