Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P01
(766 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5R4J9|NARG1_PONPY NMDA receptor regulated protein 1 87 5e-17
sp|Q9BXJ9|NARG1_HUMAN NMDA receptor regulated protein 1 (N-... 86 1e-16
sp|Q80UM3|NARG1_MOUSE NMDA receptor regulated protein 1 (N-... 84 5e-16
sp|Q6N069|NARGL_HUMAN NMDA receptor regulated 1-like protei... 79 1e-14
sp|Q9DBB4|NARGL_MOUSE NMDA receptor regulated 1-like protei... 75 2e-13
sp|Q895G1|KCY_CLOTE Cytidylate kinase (CK) (Cytidine monoph... 34 0.50
sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocyte (Er... 32 1.4
sp|Q9GHB8|MATK_PHATN Maturase K (Intron maturase) 32 2.5
sp|P75334|Y445_MYCPN Hypothetical lipoprotein MG309 homolog... 31 3.2
sp|Q8R313|EXOC6_MOUSE Exocyst complex component 6 (Exocyst ... 31 3.2
>sp|Q5R4J9|NARG1_PONPY NMDA receptor regulated protein 1
Length = 866
Score = 87.0 bits (214), Expect = 5e-17
Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 2/225 (0%)
Frame = +3
Query: 12 QKLKTQDKEDMEMAEEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYEK 191
+K K D E++ +E++ KL K PL+EA+KFL PL L I++ AF IY +
Sbjct: 625 KKKKDDDDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFR 684
Query: 192 KNKILLMLKAIKSGLRIPNSLENPYFYECFIKFLIIVKQKLPTTGETVRTVIETAMKDLP 371
K K LLML+++K I +S +P+ +EC I+ + +TVRTV++ M
Sbjct: 685 KEKFLLMLQSVKRAFAIDSS--HPWLHECMIRLFNTAVCESKDLSDTVRTVLKQEM---- 738
Query: 372 HGLDAMNKCSEITQEFSNKNKASILHQFYAWHLGNIIRNCVQNCDYSTLESSLNRPPANG 551
H L + F +N S+ H+ A + + Q L ++L+ N
Sbjct: 739 HRLFGATNPKNFNETFLKRNSDSLPHRLSAAKMVYYLDPSSQKRAIE-LATTLDESLTNR 797
Query: 552 SWKDCEIVLNKLKD--VYNLKEKDSVYNSLREKFSVTFPFCSSFM 680
+ + C VL L D + + KE +Y + K FP+ +FM
Sbjct: 798 NLQTCMEVLETLYDGSLGDCKEAAEIYRANCHKL---FPYALAFM 839
>sp|Q9BXJ9|NARG1_HUMAN NMDA receptor regulated protein 1 (N-terminal acetyltransferase)
(Tubedown-1 protein) (Tbdn100) (Gastric cancer antigen
Ga19)
Length = 866
Score = 85.9 bits (211), Expect = 1e-16
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 2/225 (0%)
Frame = +3
Query: 12 QKLKTQDKEDMEMAEEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYEK 191
+K K D E++ +E++ KL K PL+EA+KFL PL L I++ AF IY +
Sbjct: 625 KKKKDDDDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFR 684
Query: 192 KNKILLMLKAIKSGLRIPNSLENPYFYECFIKFLIIVKQKLPTTGETVRTVIETAMKDLP 371
K K LLML+++K I +S +P+ +EC I+ + +TVRTV++ M L
Sbjct: 685 KEKFLLMLQSVKRAFAIDSS--HPWLHECMIRLFNTAVCESKDLSDTVRTVLKQEMNRLF 742
Query: 372 HGLDAMNKCSEITQEFSNKNKASILHQFYAWHLGNIIRNCVQNCDYSTLESSLNRPPANG 551
+ N + F +N S+ H+ A + + Q L ++L+ N
Sbjct: 743 GATNPKN----FNETFLKRNSDSLPHRLSAAKMVYYLDPSSQKRAIE-LATTLDESLTNR 797
Query: 552 SWKDCEIVLNKLKD--VYNLKEKDSVYNSLREKFSVTFPFCSSFM 680
+ + C VL L D + + KE +Y + K FP+ +FM
Sbjct: 798 NLQTCMEVLEALYDGSLGDCKEAAEIYRANCHKL---FPYALAFM 839
>sp|Q80UM3|NARG1_MOUSE NMDA receptor regulated protein 1 (N-terminal aceyltransferase 1)
(Tubedown-1 protein)
Length = 865
Score = 83.6 bits (205), Expect = 5e-16
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 4/227 (1%)
Frame = +3
Query: 12 QKLKTQDKEDMEMAEEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYEK 191
+K K D E++ +E++ KL K PL+EA+KFL PL L I++ AF IY +
Sbjct: 625 KKKKDDDDEEIGGPKEELIPEKLAKVETPLEEAIKFLTPLKNLVKNKIETHLFAFEIYFR 684
Query: 192 KNKILLMLKAIKSGLRIPNSLENPYFYECFIKFL--IIVKQKLPTTGETVRTVIETAMKD 365
K K LLML+++K I + +P+ +EC I+ + + LP ETVRTV++ M
Sbjct: 685 KEKFLLMLQSVKRAFAIDSG--HPWLHECMIRLFHSVCESKDLP---ETVRTVLKQEMNR 739
Query: 366 LPHGLDAMNKCSEITQEFSNKNKASILHQFYAWHLGNIIRNCVQNCDYSTLESSLNRPPA 545
L + N + F +N S+ H+ A + + + Q L ++L+
Sbjct: 740 LFGATNPKN----FNETFLKRNSDSLPHRLSAAKMVYYLDSSSQKRAIE-LATTLDGSLT 794
Query: 546 NGSWKDCEIVLNKLKD--VYNLKEKDSVYNSLREKFSVTFPFCSSFM 680
N + + C VL L D + + KE Y + K FP+ +FM
Sbjct: 795 NRNLQTCMEVLEALCDGSLGDCKEAAEAYRASCHKL---FPYALAFM 838
>sp|Q6N069|NARGL_HUMAN NMDA receptor regulated 1-like protein (NARG1-like protein)
Length = 864
Score = 79.3 bits (194), Expect = 1e-14
Identities = 64/257 (24%), Positives = 111/257 (43%), Gaps = 15/257 (5%)
Frame = +3
Query: 12 QKLKTQDKEDMEMAEEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYEK 191
+K + +++E+ +E++ KL + PL+EAVKFL PL L NID+ LAF IY +
Sbjct: 625 KKKRDEEEEEASGLKEELIPEKLERVENPLEEAVKFLIPLKNLVADNIDTHLLAFEIYFR 684
Query: 192 KNKILLMLKAIKSGLRIPNSLENPYFYECFIKFLIIVKQKLPTTGETVRTVIETAMKDLP 371
K K LLML+++K I ++ NP+ +EC I+F K + + ++ +
Sbjct: 685 KGKFLLMLQSVKRAFAINSN--NPWLHECLIRF-----SKSVSNHSNLPDIVSKVLSQEM 737
Query: 372 HGLDAMNKCSEITQEFSNKNKASILH---------------QFYAWHLGNIIRNCVQNCD 506
+ ++F +N S+ H Q A + + +++ D
Sbjct: 738 QKIFVKKDLESFNEDFLKRNATSLQHLLSGAKMMYFLDKSRQEKAIAIATRLDETIKDKD 797
Query: 507 YSTLESSLNRPPANGSWKDCEIVLNKLKDVYNLKEKDSVYNSLREKFSVTFPFCSSFMTS 686
TL ++ +GS+ +C S Y R PF S+F+ +
Sbjct: 798 VKTL-IKVSEALLDGSFGNC----------------SSQYEEYRMACHNLLPFTSAFLPA 840
Query: 687 VQFKDNQNTPVVTTASH 737
V DN N + TA++
Sbjct: 841 VNEVDNPNVALNHTANY 857
>sp|Q9DBB4|NARGL_MOUSE NMDA receptor regulated 1-like protein (NARG1-like protein)
Length = 864
Score = 75.1 bits (183), Expect = 2e-13
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = +3
Query: 12 QKLKTQDKEDMEMA-EEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYE 188
QK K +++E++ +E++ KL + PL+EA+KFL PL TL +ID+ LAF IY
Sbjct: 624 QKKKREEEEEVTSGHKEELIPEKLERVDNPLEEAIKFLTPLKTLAAESIDTHLLAFEIYF 683
Query: 189 KKNKILLMLKAIKSGLRIPNSLENPYFYECFIKFLIIVK--QKLPTTGETVRTVIETAMK 362
+K K LLML+++K I ++ NP+ +EC IKF V LP + V V+ MK
Sbjct: 684 RKGKFLLMLQSVKRAFAIESN--NPWLHECLIKFSKSVSNHSNLP---DIVSKVLAQEMK 738
Query: 363 DLPHGLDAMNKCSEITQEFSNKNKASILH 449
+ D ++F N S+ H
Sbjct: 739 KIFVNKD----LHSFNEDFLRHNATSLQH 763
>sp|Q895G1|KCY_CLOTE Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase)
Length = 226
Score = 33.9 bits (76), Expect = 0.50
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = +3
Query: 90 TAPLDEAVKFLQPLLTLTPRNIDSLCLAFN---IYEKKNKILLMLKAIKSGLRIPNSLEN 260
T + A+ +L +TP N++ LC N +Y K +KI++ + + +R PN N
Sbjct: 33 TGAMYRAITYLAQNKNITPSNVEGLCNLINSISMYFKDDKIIVNGEDLSEEIRKPNVSSN 92
Query: 261 PYFYECFIK---FLIIVKQKLPTTGETVRTVIETAMKDLPH 374
Y ++ L+ +++ L E V + +PH
Sbjct: 93 VSLYASVLEVRTLLVDIQKDLACKYEVVMDGRDIGTVVMPH 133
>sp|P08032|SPTA1_MOUSE Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)
Length = 2415
Score = 32.3 bits (72), Expect = 1.4
Identities = 28/131 (21%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Frame = +3
Query: 270 YECFIKFLIIVKQKLPTTGETVRTVIET---AMKDLPHGLDAMNKCSEITQEFSNKNKAS 440
+ECF + +I + +K+ T GET + E+ A +DL +N+ + Q ++ K S
Sbjct: 1223 HECFERDIIPLGEKVNTLGETAERLCESHPDATEDLQKQRTELNEAWDTLQGLTSDRKES 1282
Query: 441 I--LHQFYAW-HLGNIIRNCVQNCDYSTLESSLNRPPANGSWKDCEIVLNKLKDVY-NLK 608
+ H+F+ + + + N ++ T+ ++ P EI+L + ++ + ++K
Sbjct: 1283 LNEAHKFFLFLSKASDLENWIK-----TIGGVISSPELAEDLTGTEILLERHQEHHDDIK 1337
Query: 609 EKDSVYNSLRE 641
+D + +L +
Sbjct: 1338 REDPTFQALED 1348
>sp|Q9GHB8|MATK_PHATN Maturase K (Intron maturase)
Length = 516
Score = 31.6 bits (70), Expect = 2.5
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +3
Query: 78 LIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYEKKNKILLMLKAI----KSGLRIP 245
LI L+ V+ LQ + P ++ L L F+ Y N IL K+I K R+
Sbjct: 160 LIPHPIHLEILVQILQCWIKDVP-SLHFLRLLFHEYHNLNSILTSKKSIYVFSKRKKRLF 218
Query: 246 NSLENPYFYECFIKFLIIVKQ 308
L N Y YEC FL I KQ
Sbjct: 219 WFLHNSYVYECEYLFLFIRKQ 239
>sp|P75334|Y445_MYCPN Hypothetical lipoprotein MG309 homolog precursor (H08_orf1325)
Length = 1325
Score = 31.2 bits (69), Expect = 3.2
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = +3
Query: 9 IQKLKTQDKEDMEMAEEKIDGSKLIKTTAPLDEAVKFLQPLLTLTPRNIDSLCLAFNIYE 188
+ KLK K+ E A++ ++ K+ +PL V +Q L+ TP +S L N
Sbjct: 697 VSKLKDNKKKVEEAAKKHVEALKVFTIPSPLYSQVILVQTKLSFTP---ESTSLGLN--- 750
Query: 189 KKNKILLMLKAIKSGLRIPNSLENPYFYE 275
L L + + NS++ YF E
Sbjct: 751 ------LALNNYLTSTELQNSIKLSYFQE 773
>sp|Q8R313|EXOC6_MOUSE Exocyst complex component 6 (Exocyst complex component Sec15A)
Length = 802
Score = 31.2 bits (69), Expect = 3.2
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 162 LCLAFNIYEKKNKILLMLKAIKSGLRIPNSLENPYFYECF-IKFLIIVKQKLPTTGETVR 338
LCL K K + +K S L+ LEN YF +F ++ + LP E
Sbjct: 132 LCLPVLEMYSKLKEQMSMKRYYSALKTMEQLENVYFPRVSQYRFCQLMMETLPKLRE--- 188
Query: 339 TVIETAMKDLPHGLDAMNKCSEITQEFSNK 428
++ M DL +GL+++ K S+ E + K
Sbjct: 189 DMMNYCMSDLTYGLESIRKHSDKIGEAAMK 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,804,920
Number of Sequences: 369166
Number of extensions: 1819204
Number of successful extensions: 4979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4973
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)