Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O13
(699 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PKS8|Y384_CHLMU Hypothetical UPF0135 protein TC0384 32 1.6
sp|Q5KAB3|CWC27_CRYNE Peptidyl-prolyl isomerase CWC27 30 4.7
sp|P33705|CD4_CANFA T-cell surface glycoprotein CD4 precurs... 30 8.0
sp|O84110|Y108_CHLTR UPF0135 protein CT108 30 8.0
>sp|Q9PKS8|Y384_CHLMU Hypothetical UPF0135 protein TC0384
Length = 251
Score = 32.0 bits (71), Expect = 1.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 193 TGLMEERKSRLFGTEIQLVA---TINASQATAVNWSCVNQIQWERI 321
TG++ +R RL IQL+A ++A NW + WER+
Sbjct: 77 TGMLYQRMQRLIENNIQLIAYHLPLDAHPEVGNNWKVAKDLGWERL 122
>sp|Q5KAB3|CWC27_CRYNE Peptidyl-prolyl isomerase CWC27
Length = 491
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Frame = -3
Query: 676 NNKNQFYSLLQSKLRTTNRTFLFPQIIVNHPLEIYSLGYLLTNKRR-------------M 536
+N +QF+ L + TN+ +F +I+ N + ++G L T+K +
Sbjct: 109 SNTSQFFITLDAAPELTNKHTMFGKIVGNTIFNVLNIGNLDTDKEERPLIPPKIRRIHII 168
Query: 535 EEPLDEFVSRV 503
E P D+ V R+
Sbjct: 169 ENPFDDIVPRI 179
>sp|P33705|CD4_CANFA T-cell surface glycoprotein CD4 precursor (T-cell surface antigen
T4/Leu-3)
Length = 463
Score = 29.6 bits (65), Expect = 8.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 219 EIVWHRNPAGGYYQCLPSDRRELVMCES 302
++VW +P GG +QCL SD+ ++++ S
Sbjct: 360 KLVWVVDPEGGTWQCLLSDKDKVLLASS 387
>sp|O84110|Y108_CHLTR UPF0135 protein CT108
Length = 251
Score = 29.6 bits (65), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 193 TGLMEERKSRLFGTEIQLVA---TINASQATAVNWSCVNQIQWERI 321
TG++ +R RL IQL+A ++A NW + WE++
Sbjct: 77 TGILYQRMQRLMEGNIQLIAYHLPLDAHTTIGNNWKVARDLGWEQL 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,740,050
Number of Sequences: 369166
Number of extensions: 1570580
Number of successful extensions: 3327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3327
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)