Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O05
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21164|FTHS_MOOTH Formate--tetrahydrofolate ligase (Form... 34 0.61
sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precurs... 33 1.0
sp|P38299|YB34_YEAST Hypothetical 60.6 kDa protein in SMP1-... 33 1.4
sp|O94988|FA13A_HUMAN Protein FAM13A1 32 2.3
sp|Q07807|PUF3_YEAST PUF3 protein 32 2.3
sp|P05499|ATP6_TOBAC ATP synthase a chain (ATPase protein 6) 32 3.0
sp|Q80W00|PP1RA_MOUSE Protein phosphatase 1 regulatory subu... 31 4.0
sp|O55000|PP1RA_RAT Protein phosphatase 1 regulatory subuni... 31 5.2
sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynaptic cytomatri... 31 5.2
sp|P26570|PPZ1_YEAST Serine/threonine protein phosphatase P... 30 8.8
>sp|P21164|FTHS_MOOTH Formate--tetrahydrofolate ligase (Formyltetrahydrofolate
synthetase) (FHS) (FTHFS)
Length = 559
Score = 33.9 bits (76), Expect = 0.61
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +2
Query: 494 GLNYNTESLKPILKNTSASYGVRENVAIIKSRTYSSFDNDQEDIQIPPAQSLITRPL--- 664
G+NY E+ K I + S YG N+ ++ ++T SF +D + P ++ R +
Sbjct: 463 GVNYTAEADKAIQRYESLGYG---NLPVVMAKTQYSFSDDMTKLGRPRNFTITVREVRLS 519
Query: 665 -GTRYVAPIT 691
G R + PIT
Sbjct: 520 AGGRLIVPIT 529
>sp|Q00799|RBP2_PLAVB Reticulocyte binding protein 2 precursor (PvRBP-2)
Length = 2867
Score = 33.1 bits (74), Expect = 1.0
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Frame = +2
Query: 275 APCNDQDQKQQKSMNSRSTS-RTKSPMTDTESNPYNLENCATLGRIRSQSTDKKNQR--- 442
A CND ++ + S+ S S S T + + + YN N T I +Q + N
Sbjct: 19 ASCNDSNRSKSNSLKSESKSLPTYANLMRNGQDKYN--NAKTEDNIGNQINNDNNHNGYN 76
Query: 443 -NAINKEAINKYRILRTPGLNYNTESLKPILKNTSASYGVRENVAIIKSRTYSSFDNDQE 619
N IN E + +P L + + K K + SY R +I K T ++ +N
Sbjct: 77 DNRINSEYPKTSHLQHSPSLVHLNDH-KFTTKPSRHSYVQRN--SIYKRNTNNNMENTNN 133
Query: 620 DIQIPPAQSLITRPLGTRYVA----PITTRTDFNNKSLPQSNSFDTSIHV 757
++ + P + + + + P T+ +NN L N+FD + ++
Sbjct: 134 ELHVVPNFFIQEKKAAPQKPSVQNTPTATQIVYNN--LDYLNAFDDTNNI 181
>sp|P38299|YB34_YEAST Hypothetical 60.6 kDa protein in SMP1-MBA1 intergenic region
Length = 523
Score = 32.7 bits (73), Expect = 1.4
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 35 QNPDTVVLKILRSHNYSDASTDPSLHYEKFA--FQDSKPLRSFAS-ADMNFVQLKSDYNL 205
++ + VVLK + N S A + S + A F+ S+PL+ A +DMN+VQ YN
Sbjct: 418 RSEEEVVLKCRKCSNNSLALKEISTYRLDSAEGFEKSQPLKDEAKLSDMNYVQGSISYNR 477
Query: 206 SCLTGKYAI 232
+ LTG + +
Sbjct: 478 TILTGLWKL 486
>sp|O94988|FA13A_HUMAN Protein FAM13A1
Length = 697
Score = 32.0 bits (71), Expect = 2.3
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +2
Query: 356 DTESNPYNLENCATLGRIRSQSTDKKNQRNAINKEAINKYRILRTP-GLNY------NTE 514
D+ES + + + + R QS ++ R+ +K INK TP G N+ NT+
Sbjct: 65 DSESGTLSASSATSARQRRRQSKEQDEVRHGRDKGLINKEN---TPSGFNHLDDCILNTQ 121
Query: 515 SLKPILKNTSASYGVRENVAIIKSRTYSSFDNDQED 622
++ + KNT G R KS T S +D +D
Sbjct: 122 EVEKVHKNTFGCAGERSKPKRQKSSTKLSELHDNQD 157
>sp|Q07807|PUF3_YEAST PUF3 protein
Length = 879
Score = 32.0 bits (71), Expect = 2.3
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Frame = +2
Query: 290 QDQKQQKSMNSRSTSRTKSPMTDTESNPYNLENCATLGRIRSQSTDKKNQRNAINKEAIN 469
+D+K K N+++ S + ++NPY LEN I +++T KKN + N+ N
Sbjct: 437 KDEKTFKKRNNKNHPANNSNNANKQANPY-LEN-----SIPTKNTSKKNASSKSNESTAN 490
Query: 470 KYR----------ILRTPGLNYNTESLKPILKNTSASYGVRENVAI 577
++ L+ Y+ L L+N+S+ N+++
Sbjct: 491 NHKSHSHSHPHSQSLQQQQQTYHRSPLLEQLRNSSSDKNSNSNMSL 536
>sp|P05499|ATP6_TOBAC ATP synthase a chain (ATPase protein 6)
Length = 395
Score = 31.6 bits (70), Expect = 3.0
Identities = 23/93 (24%), Positives = 40/93 (43%)
Frame = +2
Query: 305 QKSMNSRSTSRTKSPMTDTESNPYNLENCATLGRIRSQSTDKKNQRNAINKEAINKYRIL 484
+ S+NS TS T + + T Y+L++ T G TD + +Y I
Sbjct: 10 EDSLNSSVTSYTNASQSTTTIMDYSLKSSDTQGSSSGIFTDHPGLNPCSERIVELQYDIR 69
Query: 485 RTPGLNYNTESLKPILKNTSASYGVRENVAIIK 583
G ES + +L+ + A +G N+A ++
Sbjct: 70 LKLGALMPKESAQKVLEASEALHGESNNIAFLE 102
>sp|Q80W00|PP1RA_MOUSE Protein phosphatase 1 regulatory subunit 10 (MHC class I region
proline-rich protein CAT53)
Length = 888
Score = 31.2 bits (69), Expect = 4.0
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Frame = +2
Query: 287 DQDQKQQKSMNSRSTSRTKSPMTDTESNPYNLENCATLGRIRSQSTDKKNQRNAINKEAI 466
++D+K++K T+ + P+T+ ++ ++ +KK ++ +
Sbjct: 154 EKDKKKRKEEGKSRTTLPERPLTEVKAETR-----------AEEAPEKKKEKPKSLRTTA 202
Query: 467 NKYRILRTPGLNYNTESLKPILKNTSA-----SYGVRENVAIIKSRTYSSFDNDQEDIQI 631
+ R+ GL +T SL P+ KN+S Y ++ +S T + D
Sbjct: 203 PSHAKFRSTGLELDTPSLVPVKKNSSTVVVSDKYNLKPIPLKRQSATAAPGD------AA 256
Query: 632 PPAQSLITRPLGTRYVAPITTR 697
PPA+ +PL T AP TT+
Sbjct: 257 PPAEKKY-KPLNT---APNTTK 274
>sp|O55000|PP1RA_RAT Protein phosphatase 1 regulatory subunit 10 (Phosphatase 1 nuclear
targeting subunit) (PNUTS protein) (MHC class I region
proline-rich protein CAT53)
Length = 872
Score = 30.8 bits (68), Expect = 5.2
Identities = 18/86 (20%), Positives = 40/86 (46%)
Frame = +2
Query: 287 DQDQKQQKSMNSRSTSRTKSPMTDTESNPYNLENCATLGRIRSQSTDKKNQRNAINKEAI 466
++D+K++K T+ + P+T+ ++ ++ +KK ++ +
Sbjct: 154 EKDKKKRKEEGKSRTTLPERPLTEVKAETR-----------AEEAPEKKKEKPKSLRTTA 202
Query: 467 NKYRILRTPGLNYNTESLKPILKNTS 544
+ R+ GL +T SL P+ KN+S
Sbjct: 203 PSHAKFRSTGLELDTPSLVPVKKNSS 228
>sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynaptic cytomatrix protein) (Aczonin)
(Brain-derived HLMN protein)
Length = 5038
Score = 30.8 bits (68), Expect = 5.2
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = +2
Query: 497 LNYNTESLKPILKNTSASYGVRENVAIIKSRTYSSFDNDQEDIQIPPAQSLITRPLGTRY 676
L TES++ ++S + ++IKSR++ F + +D+Q+P + + P ++
Sbjct: 4723 LKEQTESIEHGKSHSSQNSQQSPKPSVIKSRSHGIFPDPSKDMQVPTIEKSHSSPGSSKS 4782
Query: 677 VAPITTRTDFNNKSLPQSNSFDTSIHVRGSS--------WKNRSGPTKPILTNKEPS 823
+ R+ ++S +++ T + G++ + R PTKP TN P+
Sbjct: 4783 SSEGHLRSHGPSRSQSKTSVAQTHLEDAGAAIAAAEAAVQQLRIQPTKP--TNHRPA 4837
>sp|P26570|PPZ1_YEAST Serine/threonine protein phosphatase PP-Z1
Length = 692
Score = 30.0 bits (66), Expect = 8.8
Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 53/216 (24%)
Frame = +2
Query: 284 NDQDQKQQKSMNSRSTSRTKSPMTD--TESNPYNLENCATLGRIRSQSTDKKNQRNAINK 457
+++ + ++S+ S ST+ T S + D T S P N + S T++ + ++ +
Sbjct: 40 SNKSSRSRRSLPSSSTTNTNSNVPDPSTPSKP----NLEVNHQRHSSHTNRYHFPSSSHS 95
Query: 458 EAINKYRILRTPGLN------------YNT-------------ESLKPILKNTSASYGVR 562
+ ++ +L TP + YNT E PILK ++S V
Sbjct: 96 HSNSQNELLTTPSSSSTKRPSTSRRSSYNTKAAADLPPSMIQMEPKSPILKTNNSSTHVS 155
Query: 563 ENVAIIKSRTYSSF----DNDQEDIQIPP----AQSLITRPLGTRYVAPITTRTDFNNK- 715
++ + S Y + DND +D I ++S +RP R + ++D ++
Sbjct: 156 KHKSSYSSTYYENALTDDDNDDKDNDISHTKRFSRSSNSRPSSIRSGSVSRRKSDVTHEE 215
Query: 716 -----------------SLPQSNSFDTSIHVRGSSW 772
+L +SNS +S+H R SS+
Sbjct: 216 PNNGSYSSNNQENYLVQALTRSNSHASSLHSRKSSF 251
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,212,264
Number of Sequences: 369166
Number of extensions: 1774639
Number of successful extensions: 4706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4704
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)