Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O03
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mi... 131 2e-30
sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondri... 111 2e-24
sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondri... 105 1e-22
sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondri... 104 3e-22
sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mi... 68 2e-11
sp|P59414|AROE_BUCBP Shikimate dehydrogenase 31 4.2
sp|P36700|V110_FOWPV Protein FPV110 30 7.2
sp|P37897|AMPN_LACLC Aminopeptidase N (Lysyl aminopeptidase... 30 9.4
sp|Q8NGS6|O13C3_HUMAN Olfactory receptor 13C3 30 9.4
sp|P54325|XKDE_BACSU Phage-like element PBSX protein xkdE 30 9.4
>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial precursor
Length = 361
Score = 131 bits (329), Expect = 2e-30
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 1/243 (0%)
Frame = +2
Query: 41 IREMRTRHRNSRFMIMNTYQPWPQP-PNIKEIFGDFDQSNPAEMRDFLRRSGMLPKRVFS 217
+R +T+H F + + PN++E D + EMR ++ G+LP R +
Sbjct: 47 VRHRQTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKE---EMRSRMKERGVLPPRPWM 103
Query: 218 DRAINFSCTEHIINDFVPPEGDGXXXXXXXXXXXXXXXITQGKMKNMKATKTIRKYEADF 397
+R + SCT I +VPPEGDG + K K++ A + IR Y+ +F
Sbjct: 104 ERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENF 163
Query: 398 DKKKIIAYGESIYREVLTLLPKYKNNEARLLEFVTEKGLCDMLRGLENKTLVHTFHKHLE 577
A + IY + T + ++ ++ EFV+E+ +M+ +++KT+ F + LE
Sbjct: 164 SSDDFGAEAQDIYIQAHTHMAA--KDKYKIREFVSERCYPEMMHNVKDKTIRWKFLQSLE 221
Query: 578 KPSIISIRTEQGLTEGIIFAQVVIRFFSEQTIAVFDKFGRLIYGNHELPQDFLEYVVFER 757
P ++ R + +T+ FAQV +RF S+Q +A++D+FGRL++G+ + +D LEYVVFE+
Sbjct: 222 PPRVVHARVTEVITKENQFAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVLEYVVFEK 281
Query: 758 QIS 766
IS
Sbjct: 282 HIS 284
>sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondrial precursor (L45mt)
(MRP-L45)
Length = 306
Score = 111 bits (278), Expect = 2e-24
Identities = 61/201 (30%), Positives = 107/201 (53%)
Frame = +2
Query: 164 EMRDFLRRSGMLPKRVFSDRAINFSCTEHIINDFVPPEGDGXXXXXXXXXXXXXXXITQG 343
E R++G++ SDR+I+ +CT I + +VPPEGD +
Sbjct: 55 EFMQHARKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKK 114
Query: 344 KMKNMKATKTIRKYEADFDKKKIIAYGESIYREVLTLLPKYKNNEARLLEFVTEKGLCDM 523
M + + + I+ Y+A+F K + I+ E L ++ RL VTE DM
Sbjct: 115 TMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDM 172
Query: 524 LRGLENKTLVHTFHKHLEKPSIISIRTEQGLTEGIIFAQVVIRFFSEQTIAVFDKFGRLI 703
++ KT+ +F + LE ++ +R + +G ++ Q+ +R + QT+A++D+FGRL+
Sbjct: 173 TWDIKYKTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLM 232
Query: 704 YGNHELPQDFLEYVVFERQIS 766
YG ++P+D LEYVVFE+Q++
Sbjct: 233 YGQEDVPKDVLEYVVFEKQLT 253
>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial precursor (L45mt)
(MRP-L45)
Length = 306
Score = 105 bits (263), Expect = 1e-22
Identities = 60/200 (30%), Positives = 105/200 (52%)
Frame = +2
Query: 164 EMRDFLRRSGMLPKRVFSDRAINFSCTEHIINDFVPPEGDGXXXXXXXXXXXXXXXITQG 343
E ++ R++G++ + +R I+ +CT I + +VPPEGD +
Sbjct: 55 EFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRK 114
Query: 344 KMKNMKATKTIRKYEADFDKKKIIAYGESIYREVLTLLPKYKNNEARLLEFVTEKGLCDM 523
+ A + IR+++A+F K + I+ E L ++ RL VTE DM
Sbjct: 115 NAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNN--SDHDRLHTLVTEHCFPDM 172
Query: 524 LRGLENKTLVHTFHKHLEKPSIISIRTEQGLTEGIIFAQVVIRFFSEQTIAVFDKFGRLI 703
+ L+ KT+ F + LE ++ +R + + ++ QV +R + QT+A++D+FGRL+
Sbjct: 173 VWDLKYKTVRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLM 232
Query: 704 YGNHELPQDFLEYVVFERQI 763
YG ++P+D LEYVVFER +
Sbjct: 233 YGQEDVPKDVLEYVVFERHL 252
>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial precursor (L45mt)
(MRP-L45)
Length = 309
Score = 104 bits (259), Expect = 3e-22
Identities = 56/194 (28%), Positives = 107/194 (55%)
Frame = +2
Query: 182 RRSGMLPKRVFSDRAINFSCTEHIINDFVPPEGDGXXXXXXXXXXXXXXXITQGKMKNMK 361
R +G++ + +R IN +CT I++ +VPPEGD + +
Sbjct: 61 RAAGVVTPQETMERPINIACTAGILDPYVPPEGDARLSSLSKEGLKQRTQQLKQTAASQL 120
Query: 362 ATKTIRKYEADFDKKKIIAYGESIYREVLTLLPKYKNNEARLLEFVTEKGLCDMLRGLEN 541
A + +++Y+++F K + I+ L + ++ L VTE+ +M+RG
Sbjct: 121 AIRKVKEYDSEFTTKTFPEKAQEIFITAHKYLTNFDRHKLHTL--VTERCYPEMVRGNRY 178
Query: 542 KTLVHTFHKHLEKPSIISIRTEQGLTEGIIFAQVVIRFFSEQTIAVFDKFGRLIYGNHEL 721
+T+ +F + +E P ++ +R + +++G ++AQV +R ++QT+ V+D+FGR++ G+ E
Sbjct: 179 RTIRWSFVESIEAPRVVQVRCPEMVSKGNLYAQVTVRMHNKQTLIVYDRFGRVMCGSEE- 237
Query: 722 PQDFLEYVVFERQI 763
P+D LEYVVFER +
Sbjct: 238 PRDVLEYVVFERHM 251
>sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mitochondrial precursor
Length = 376
Score = 68.2 bits (165), Expect = 2e-11
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 26/232 (11%)
Frame = +2
Query: 149 QSNPAEMRDFLRRSGMLP-----KRVFSDRAINFSCTEHIINDFVPPEGDGXXXXXXXXX 313
+ +P EMR L + G+ P RV+++ + F I + +VPPE G
Sbjct: 82 EMSPGEMRTELLKRGINPYKEAQPRVWNEAQVTFQSIYGIADPYVPPENPGSFTDVNNKF 141
Query: 314 XXXXXXITQGKMKNMK-ATKTIRKYEA--DFDKKKIIAYGESIYREV--------LTLLP 460
I Q K N + T IRK + FD K A E IY + T +
Sbjct: 142 DEVKQRI-QHKFYNWRMGTNRIRKKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMY 200
Query: 461 KYKNNEARLLEFV---------TEKGLCDMLRGLENKTLVHTFHKHLEKPSIISIRT-EQ 610
KY A L+F T L M +EN ++ LE ++++R +
Sbjct: 201 KYITEYAFALKFSHLSPKIPPKTPIFLQKMWPDVENGSVRFELISVLEPSRVVAVRCFDN 260
Query: 611 GLTEGIIFAQVVIRFFSEQTIAVFDKFGRLIYGNHELPQDFLEYVVFERQIS 766
G AQ+ +R + Q +AV+D+FG L+ G+ + +D +EYVVFE I+
Sbjct: 261 PPKSGNDIAQITVRMHTRQKLAVYDRFGGLLLGSEDEEKDVVEYVVFENHIA 312
>sp|P59414|AROE_BUCBP Shikimate dehydrogenase
Length = 282
Score = 30.8 bits (68), Expect = 4.2
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = -2
Query: 570 CL*NVCTNVLFSNPLNMSQSPFSVTNSSKRASLFLYFGKRVKTSR*IDSPYAIIFFLSK 394
C+ C +F NP+N +QSP+ + SK+ + + R+ + +S Y + FFL+K
Sbjct: 5 CIDQFC---VFGNPINHTQSPYIHSLFSKQTGIVYEYSARLVPFKEFNS-YVLNFFLNK 59
>sp|P36700|V110_FOWPV Protein FPV110
Length = 451
Score = 30.0 bits (66), Expect = 7.2
Identities = 20/96 (20%), Positives = 51/96 (53%)
Frame = +2
Query: 428 SIYREVLTLLPKYKNNEARLLEFVTEKGLCDMLRGLENKTLVHTFHKHLEKPSIISIRTE 607
+++ +++ L + + + + +E +++ L D+ + + K + + L K +I S E
Sbjct: 281 TLFSDIIKLSEEIIDKDFKNMEKMSDSVLADVKQISKTK---NKLRERLLKAAISSKEVE 337
Query: 608 QGLTEGIIFAQVVIRFFSEQTIAVFDKFGRLIYGNH 715
+ L++ + + I+ FS AV+D + ++IY N+
Sbjct: 338 EILSDIPVIEEGTIKQFSLNQRAVYDHYKKVIYKNN 373
>sp|P37897|AMPN_LACLC Aminopeptidase N (Lysyl aminopeptidase) (Lys-AP) (Alanine
aminopeptidase)
Length = 846
Score = 29.6 bits (65), Expect = 9.4
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = +2
Query: 347 MKNMKATKTIRKYEADFDKKKIIAYGESIYREVLTLLPKYKNNEARLLEFVTEKGLCDML 526
+ +++ + + K++ D+K + G Y +V+ +LP + N E+ ++ GL ++
Sbjct: 531 LSEVESLENVTKFQILQDRKLLAKAGVISYADVVNILPSFTNEES----YLVNTGLSQLI 586
Query: 527 RGLE 538
LE
Sbjct: 587 SELE 590
>sp|Q8NGS6|O13C3_HUMAN Olfactory receptor 13C3
Length = 317
Score = 29.6 bits (65), Expect = 9.4
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = -2
Query: 393 SASYLRIVLVAFIFFILP*VISFDSFSFVKLNKDDFPSPSGGTKSLIICSVHEKFIALSL 214
S + + +V+ F +LP ++ F S+ F+ S +G K+ CS H + +
Sbjct: 193 SLNIITMVISNMAFLVLPLMVIFFSYMFILYTILQMNSATGRRKAFSTCSAHLTVVIIFY 252
Query: 213 NTRF 202
T F
Sbjct: 253 GTIF 256
>sp|P54325|XKDE_BACSU Phage-like element PBSX protein xkdE
Length = 495
Score = 29.6 bits (65), Expect = 9.4
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Frame = +2
Query: 341 GKMKNMKATKTIRKYEADFDKKKII--AYGESIYRE------VLTLLPKYKNNEA 481
GKMK +K K RKY + KK+ YG+ + V TL KY+ NEA
Sbjct: 172 GKMKRIKRQKRFRKYVQMINGKKVFFKEYGDPRKMDIRTGEYVNTLAEKYQANEA 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,557,691
Number of Sequences: 369166
Number of extensions: 1659222
Number of successful extensions: 4573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)