Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O01
(586 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35280|RAB8A_RAT Ras-related protein Rab-8A >gi|82592519... 197 2e-50
sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A >gi|468103... 196 4e-50
sp|P22128|RAB8_DISOM Ras-related protein Rab-8 (ORA2) 194 1e-49
sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B 194 2e-49
sp|P70550|RAB8B_RAT Ras-related protein Rab-8B >gi|46576875... 192 4e-49
sp|P61027|RAB10_MOUSE Ras-related protein Rab-10 >gi|465776... 189 6e-48
sp|P24409|RAB10_CANFA Ras-related protein Rab-10 187 1e-47
sp|P22127|RAB10_DISOM Ras-related protein Rab-10 (ORA1) 185 8e-47
sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 178 1e-44
sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 177 2e-44
>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A
sp|P55258|RAB8A_MOUSE Ras-related protein Rab-8A (Oncogene c-mel)
Length = 207
Score = 197 bits (501), Expect = 2e-50
Identities = 93/159 (58%), Positives = 127/159 (79%), Gaps = 2/159 (1%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T+ELDGK++KLQ+WDTAGQERFRTITT+YYRGA GIMLVYD+TN SF+NI
Sbjct: 40 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
W++NI EHA++DVEKM++GNK D++D+R++S++ G K++ ++GI F ETSAK++ NV+
Sbjct: 100 RNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159
Query: 363 QAFRMLTMEIKKKFDSR--GQNAKTPENGHKLTKEPNKR 473
AF L +IK K D + G + + +G K+T E KR
Sbjct: 160 NAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQKR 198
>sp|Q4R5P1|RAB8A_MACFA Ras-related protein Rab-8A
sp|P61006|RAB8A_HUMAN Ras-related protein Rab-8A (Oncogene c-mel)
sp|P61007|RAB8A_CANFA Ras-related protein Rab-8A (Oncogene c-mel)
Length = 207
Score = 196 bits (498), Expect = 4e-50
Identities = 92/159 (57%), Positives = 126/159 (79%), Gaps = 2/159 (1%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T+ELDGK++KLQ+WDTAGQERFRTITT+YYRGA GIMLVYD+TN SF+NI
Sbjct: 40 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
W++NI EHA++DVEKM++GNK D++D+R++S++ G K++ ++GI F ETSAK++ NV+
Sbjct: 100 RNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVE 159
Query: 363 QAFRMLTMEIKKKFDSR--GQNAKTPENGHKLTKEPNKR 473
AF L +IK K D + G + + G K+T + KR
Sbjct: 160 NAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKR 198
>sp|P22128|RAB8_DISOM Ras-related protein Rab-8 (ORA2)
Length = 210
Score = 194 bits (493), Expect = 1e-49
Identities = 96/171 (56%), Positives = 130/171 (76%), Gaps = 4/171 (2%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T+ELDGKK+KLQ+WDTAGQERFRTITT+YYRGA GIM VYD+TN SF+NI
Sbjct: 40 TIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
W++NI EHA+SDVE+M++GNK D++++R++S++ G K++ ++GI F ETSAKSS NV+
Sbjct: 100 KNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVE 159
Query: 363 QAFRMLTMEIKKKFDSRGQNAKTPENGHKLTKEPNK--RKKKRLG--CTIL 503
+AF L +I K + + E KL P K +KKK+L C++L
Sbjct: 160 EAFITLARDIMTKLNKKMNENSLQEAVDKLKSPPKKPSQKKKQLSFRCSLL 210
>sp|Q92930|RAB8B_HUMAN Ras-related protein Rab-8B
Length = 207
Score = 194 bits (492), Expect = 2e-49
Identities = 91/159 (57%), Positives = 125/159 (78%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T+ELDGKK+KLQ+WDTAGQERFRTITT+YYRGA GIMLVYD+TN SF+NI
Sbjct: 40 TIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
W++NI EHA+SDVE+M++GNK D++D+R++S++ G K++ ++GI F ETSAKSS NV+
Sbjct: 100 KNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVE 159
Query: 363 QAFRMLTMEIKKKFDSRGQNAKTPENGHKLTKEPNKRKK 479
+AF L +I K + + ++ + G + N+ KK
Sbjct: 160 EAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKK 198
>sp|P70550|RAB8B_RAT Ras-related protein Rab-8B
sp|P61028|RAB8B_MOUSE Ras-related protein Rab-8B
Length = 207
Score = 192 bits (489), Expect = 4e-49
Identities = 94/169 (55%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T+ELDGKK+KLQ+WDTAGQERFRTITT+YYRGA GIMLVYD+TN SF+NI
Sbjct: 40 TIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
W++NI EHA+SDVE+M++GNK D++D+R++S++ G K++ ++GI F ETSAKSS NV+
Sbjct: 100 KNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVE 159
Query: 363 QAFRMLTMEIKKKFDSRGQNAKTPENGH--KLTKEPNKRKKKRLGCTIL 503
+AF L +I K + + ++ + G K+T E +K C++L
Sbjct: 160 EAFFTLARDIMTKLNRKMNDSNSSGAGGPVKIT-ESRSKKTSFFRCSLL 207
>sp|P61027|RAB10_MOUSE Ras-related protein Rab-10
sp|P61026|RAB10_HUMAN Ras-related protein Rab-10
Length = 200
Score = 189 bits (479), Expect = 6e-48
Identities = 87/142 (61%), Positives = 115/142 (80%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKIKT+EL GKK+KLQ+WDTAGQERF TITTSYYRGA GIMLVYD+TN SF NI
Sbjct: 41 TIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENI 100
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
++W++NI EHAN DVE+ML+GNK D+DD+R + + G ++++EHGI F ETSAK++ N++
Sbjct: 101 SKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIE 160
Query: 363 QAFRMLTMEIKKKFDSRGQNAK 428
+AF L +I +K + N++
Sbjct: 161 KAFLTLAEDILRKTPVKEPNSE 182
>sp|P24409|RAB10_CANFA Ras-related protein Rab-10
Length = 200
Score = 187 bits (476), Expect = 1e-47
Identities = 87/142 (61%), Positives = 114/142 (80%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKIKT+EL GKK+KLQ+WDTAGQERF TITTSYYRGA GIMLVYD+TN SF NI
Sbjct: 41 TIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENI 100
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
++W++NI EHAN DVE+ML+GNK D+DD+R + + G ++++EHGI F ETSAK + N++
Sbjct: 101 SKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIE 160
Query: 363 QAFRMLTMEIKKKFDSRGQNAK 428
+AF L +I +K + N++
Sbjct: 161 KAFLTLAEDILRKTPVKEPNSE 182
>sp|P22127|RAB10_DISOM Ras-related protein Rab-10 (ORA1)
Length = 200
Score = 185 bits (469), Expect = 8e-47
Identities = 85/133 (63%), Positives = 111/133 (83%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKIKT+EL GKK+KLQ+WDTAGQERF TITTSYYRGA GIMLVYD+TNA SF NI
Sbjct: 41 TIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENI 100
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
++W++NI EHAN DVE+ML+GNK D++D+R + + G ++++EH I F ETSAK++ N++
Sbjct: 101 SKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIE 160
Query: 363 QAFRMLTMEIKKK 401
+AF L +I +K
Sbjct: 161 KAFLTLAEDILQK 173
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13
Length = 203
Score = 178 bits (451), Expect = 1e-44
Identities = 86/160 (53%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T++++GKK+KLQVWDTAGQERF+TITT+YYRGA GI+LVYD+T+ SF NI
Sbjct: 40 TIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
WM++I E+A++ VE++L+GNK D++ +R++ ++ K+++EHGI F ETSAKSS NVD
Sbjct: 100 QNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVD 159
Query: 363 QAFRMLTMEIKKKFDSR--GQNAKTPENGHKLTKEPNKRK 476
+AF L +I K R G K P K + N K
Sbjct: 160 EAFSSLARDILLKSGGRRSGNGNKPPSTDLKTCDKKNTNK 199
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13
Length = 202
Score = 177 bits (449), Expect = 2e-44
Identities = 88/164 (53%), Positives = 122/164 (74%), Gaps = 2/164 (1%)
Frame = +3
Query: 3 TIGIDFKIKTMELDGKKVKLQVWDTAGQERFRTITTSYYRGATGIMLVYDVTNASSFNNI 182
TIGIDFKI+T++++GK++KLQVWDTAGQERF+TITT+YYRGA GI+LVYD+T+ SF NI
Sbjct: 40 TIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENI 99
Query: 183 NQWMQNIAEHANSDVEKMLIGNKSDLDDRREISRDSGFKVSQEHGILFSETSAKSSENVD 362
WM++I E+A++ VE++L+GNK D++ +R++ R+ K+++EH I F ETSAKSS NVD
Sbjct: 100 QNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVD 159
Query: 363 QAFRMLTMEIKKKFDSR--GQNAKTPENGHKLTKEPNKRKKKRL 488
+AF L +I K R G N+K G K +K+K K L
Sbjct: 160 EAFSSLARDILLKTGGRRSGTNSKPSSTG---LKTSDKKKNKCL 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,301,252
Number of Sequences: 369166
Number of extensions: 1238613
Number of successful extensions: 4218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4008
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)