Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N17
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precurs... 60 2e-09
sp|P23805|CONG_BOVIN Conglutinin precursor 58 6e-09
sp|P22897|MANR1_HUMAN Macrophage mannose receptor precursor... 57 1e-08
sp|P43025|TETN_MOUSE TETRANECTIN preCURSOR (TN) (PLASMINOGE... 57 2e-08
sp|O75596|CLC3A_HUMAN C-type lectin domain family 3 member ... 56 2e-08
sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein... 56 3e-08
sp|P13611|CSPG2_HUMAN Versican core protein precursor (Larg... 55 4e-08
sp|P81282|CSPG2_BOVIN Versican core protein precursor (Larg... 55 4e-08
sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member ... 55 4e-08
sp||Q9ERB4_2 [Segment 2 of 2] Versican core protein precurs... 55 4e-08
>sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precursor (MMR)
Length = 1456
Score = 59.7 bits (143), Expect = 2e-09
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 EDSGYQFTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIG 182
+D Y F+K++ D+A ++C+ L TI +++ K ++ K+G S + G I
Sbjct: 808 KDYQYYFSKEKETMDNARRFCKKNFGDLATIKSESEKKFLWKYINKNGGQSPYFIGMLIS 867
Query: 183 YESDWKNTDGELIKFKPWHQVEPN-GGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+ + DG + F W EPN ENC+ ++ +G WND++C ICQ
Sbjct: 868 MDKKFIWMDGSKVDFVAWATGEPNFANDDENCVT-MYTNSGFWNDINCGYPNNFICQ 923
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Frame = +3
Query: 27 KDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNT 206
+++ + DA + C+ L +I+N A + ++ + W NDI E + T
Sbjct: 964 EEKKSWQDARQACKGLKGNLVSIEN-AQEQAFVTYHMRDSTFNAWTGLNDINAEHMFLWT 1022
Query: 207 DGELIKFKPWHQVEPNGGRGE------NC---IHGLFYPNGIWNDVSCASTQAVICQ 350
G+ + + W + P G R +C I G G W D +C S Q ICQ
Sbjct: 1023 AGQGVHYTNWGKGYPGGRRSSLSYEDADCVVVIGGNSREAGTWMDDTCDSKQGYICQ 1079
Score = 36.6 bits (83), Expect = 0.018
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +3
Query: 24 TKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGS-YWINGNDIGYESDWK 200
+K + A C+ +N L ++ ++ +Y + L S WI N + S W+
Sbjct: 234 SKSALTWHQARASCKQQNADLLSVTE--IHEQMYLTGLTSSLSSGLWIGLNSLSVRSGWQ 291
Query: 201 NTDGELIKFKPWHQVEPNGGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
G ++ W P+ G++C+ N W ++ C IC+
Sbjct: 292 WAGGSPFRYLNWLPGSPSSEPGKSCVSLNPGKNAKWENLECVQKLGYICK 341
Score = 36.2 bits (82), Expect = 0.024
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 63 CRAKNMKLPTIDNDATNKVV-YDIAVKHGLGSYWINGNDIGYESDWKNTDGELIKFKPWH 239
C L +I+ A + + Y + ++WI G E W + + F W
Sbjct: 1262 CLRMGASLVSIETAAESSFLSYRVEPLKSKTNFWI-GMFRNVEGKWLWLNDNPVSFVNWK 1320
Query: 240 QVEPNGGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+P+G R + + L +G+WN++ C+S + IC+
Sbjct: 1321 TGDPSGERNDCVV--LASSSGLWNNIHCSSYKGFICK 1355
Score = 35.0 bits (79), Expect = 0.053
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = +3
Query: 51 AVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNTDGELIKFK 230
A++ CR + L +I + ++ WI NDI + ++ +DG + F
Sbjct: 387 ALQACRKEGGDLASIHSIEEFDFIFSQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFT 446
Query: 231 PWHQVEPN--GGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
W EP+ R E+C+ + +G W D +C IC+
Sbjct: 447 KWLPGEPSHENNRQEDCV-VMKGKDGYWADRACEQPLGYICK 487
Score = 34.7 bits (78), Expect = 0.070
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = +3
Query: 60 YCRAKNMKLPTIDNDATNKVVYDIAVKHGLGS--YWINGNDIGYESD---WKNTDGELIK 224
+C+A +L +I + +V++ + G +W+ G G S+ W +DG +
Sbjct: 679 FCKAIGGELASIKSKDEQQVIWRLITSSGSYHELFWL-GLTYGSPSEGFTW--SDGSPVS 735
Query: 225 FKPWHQVEPNGGRG-ENCIHGLFYPNGIWNDVSCASTQAVICQ 350
++ W EPN + E C P WND++C ICQ
Sbjct: 736 YENWAYGEPNNYQNVEYCGELKGDPGMSWNDINCEHLNNWICQ 778
>sp|P23805|CONG_BOVIN Conglutinin precursor
Length = 371
Score = 58.2 bits (139), Expect = 6e-09
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Frame = +3
Query: 39 NHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNTDGEL 218
++ DA + CR +L + + A N+ V + +Y ++ NDI E + GE+
Sbjct: 267 SYSDAEQLCREAKGQLASPRSSAENEAVTQMVRAQEKNAY-LSMNDISTEGRFTYPTGEI 325
Query: 219 IKFKPWHQVEPNG---GRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+ + W EPN G+ ENC+ +P+G WNDV C+ VIC+
Sbjct: 326 LVYSNWADGEPNNSDEGQPENCVE--IFPDGKWNDVPCSKQLLVICE 370
>sp|P22897|MANR1_HUMAN Macrophage mannose receptor precursor (MMR) (CD206 antigen)
Length = 1456
Score = 57.4 bits (137), Expect = 1e-08
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 EDSGYQFTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIG 182
+D Y F+K++ D+A +C+ L +I +++ K ++ ++ S + G I
Sbjct: 808 KDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFLWKYVNRNDAQSAYFIGLLIS 867
Query: 183 YESDWKNTDGELIKFKPWHQVEPN-GGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+ + DG + + W EPN ENC+ ++ +G WND++C A ICQ
Sbjct: 868 LDKKFAWMDGSKVDYVSWATGEPNFANEDENCVT-MYSNSGFWNDINCGYPNAFICQ 923
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Frame = +3
Query: 27 KDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNT 206
++R N +A K C L +I N+ + +K S W ND+ E + T
Sbjct: 965 EERKNWQEARKACIGFGGNLVSIQNEK-EQAFLTYHMKDSTFSAWTGLNDVNSEHTFLWT 1023
Query: 207 DGELIKFKPWHQVEPNGGRGE------NC---IHGLFYPNGIWNDVSCASTQAVICQ 350
DG + + W + P G R +C I G G W D +C S + ICQ
Sbjct: 1024 DGRGVHYTNWGKGYPGGRRSSLSYEDADCVVIIGGASNEAGKWMDDTCDSKRGYICQ 1080
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Frame = +3
Query: 24 TKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGS-YWINGNDIGYESDWK 200
+K + A K C+ +N +L +I ++ Y + L S WI N + + S W+
Sbjct: 234 SKSALTWHQARKSCQQQNAELLSITE--IHEQTYLTGLTSSLTSGLWIGLNSLSFNSGWQ 291
Query: 201 NTDGELIKFKPWHQVEPNGGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+D ++ W P+ G++C+ N W ++ C IC+
Sbjct: 292 WSDRSPFRYLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYICK 341
Score = 36.6 bits (83), Expect = 0.018
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Frame = +3
Query: 60 YCRAKNMKLPTIDNDATNKVVYDIAVKHGLGS--YWINGNDIGYESD---WKNTDGELIK 224
+CRA L +I+N + ++ + G +W+ G G S+ W +DG +
Sbjct: 679 FCRALGGDLASINNKEEQQTIWRLITASGSYHKLFWL-GLTYGSPSEGFTW--SDGSPVS 735
Query: 225 FKPWHQVEPNGGRG-ENCIHGLFYPNGIWNDVSCASTQAVICQ 350
++ W EPN + E C P WND++C ICQ
Sbjct: 736 YENWAYGEPNNYQNVEYCGELKGDPTMSWNDINCEHLNNWICQ 778
Score = 36.2 bits (82), Expect = 0.024
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +3
Query: 39 NHDDAVKYCRAKNMKLPTIDNDATNKVV-YDIAVKHGLGSYWINGNDIGYESDWKNTDGE 215
N A C L +I++ A + + Y + ++WI G E W +
Sbjct: 1255 NWGQASLECLRMGSSLVSIESAAESSFLSYRVEPLKSKTNFWI-GLFRNVEGTWLWINNS 1313
Query: 216 LIKFKPWHQVEPNGGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+ F W+ +P+G R + C+ L +G W+++ C+S + IC+
Sbjct: 1314 PVSFVNWNTGDPSGERND-CV-ALHASSGFWSNIHCSSYKGYICK 1356
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = +3
Query: 48 DAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNTDGELIKF 227
DA+ CR + L +I + WI NDI + ++ +DG + F
Sbjct: 386 DALTTCRKEGGDLTSIHTIEELDFIISQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTF 445
Query: 228 KPWHQVEPN--GGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
W + EP+ R E+C+ + +G W D C IC+
Sbjct: 446 TKWLRGEPSHENNRQEDCV-VMKGKDGYWADRGCEWPLGYICK 487
>sp|P43025|TETN_MOUSE TETRANECTIN preCURSOR (TN) (PLASMINOGEN-KRINGLE 4 BINDING PROTEIN)
Length = 202
Score = 56.6 bits (135), Expect = 2e-08
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Frame = +3
Query: 21 FTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGS---YWINGNDIGYES 191
FT+ + H+ A + C ++ L T ++ N+ +++ A +H +G+ W+ ND+ E
Sbjct: 85 FTQPKTFHE-ASEDCISQGGTLGTPQSELENEALFEYA-RHSVGNDANIWLGLNDMAAEG 142
Query: 192 DWKNTDGELIKFKPWHQ---VEPNGGRGENCIHGLFYPNGIWNDVSCASTQAVICQ 350
W + G L+ +K W +P+GG+ ENC NG W D C ICQ
Sbjct: 143 AWVDMTGGLLAYKNWETEITTQPDGGKAENCAALSGAANGKWFDKRCRDQLPYICQ 198
>sp|O75596|CLC3A_HUMAN C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 197
Score = 56.2 bits (134), Expect = 2e-08
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +3
Query: 144 GLGSYWINGNDIGYESDWKNTDGELIKFKPWHQVEPNGGRGENCIHGLFYPNGIWNDVSC 323
G+ +W+ ND+ E + + +G I F W + +PNGG+ ENC+ G W+D +C
Sbjct: 124 GVNDFWLGINDMVTEGKFVDVNGIAISFLNWDRAQPNGGKRENCVLFSQSAQGKWSDEAC 183
Query: 324 ASTQAVICQ 350
S++ IC+
Sbjct: 184 RSSKRYICE 192
>sp|P35248|SFTPD_RAT Pulmonary surfactant-associated protein D precursor (SP-D) (PSP-D)
(CP4)
Length = 374
Score = 55.8 bits (133), Expect = 3e-08
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +3
Query: 45 DDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESDWKNTDGELIK 224
+DA + CR +L + + N V + H ++ ++ D+G E + GE +
Sbjct: 274 EDAKEMCRQAGGQLASPRSATENAAVQQLVTAHSKAAF-LSMTDVGTEGKFTYPTGEALV 332
Query: 225 FKPWHQVEPNGGRG-ENCIHGLFYPNGIWNDVSCASTQAVICQ 350
+ W EPN G ENC+ + NG WND +C + VIC+
Sbjct: 333 YSNWAPGEPNNNGGAENCVE--IFTNGQWNDKACGEQRLVICE 373
>sp|P13611|CSPG2_HUMAN Versican core protein precursor (Large fibroblast proteoglycan)
(Chondroitin sulfate proteoglycan core protein 2) (PG-M)
(Glial hyaluronate-binding protein) (GHAP)
Length = 3396
Score = 55.5 bits (132), Expect = 4e-08
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = +3
Query: 15 YQFTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESD 194
Y++ R D A + CR + L +I + V + G WI ND +E D
Sbjct: 3181 YKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV----GHDYQWIGLNDKMFEHD 3236
Query: 195 WKNTDGELIKFKPWHQVEPNG--GRGENCIHGLFYPNGIWNDVSC 323
++ TDG ++++ W +P+ GE+C+ +++ NG WNDV C
Sbjct: 3237 FRWTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPC 3281
>sp|P81282|CSPG2_BOVIN Versican core protein precursor (Large fibroblast proteoglycan)
(Chondroitin sulfate proteoglycan core protein 2) (PG-M)
(Glial hyaluronate-binding protein) (GHAP)
Length = 3381
Score = 55.5 bits (132), Expect = 4e-08
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = +3
Query: 15 YQFTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESD 194
Y++ R D A + CR + L +I + V + G WI ND +E D
Sbjct: 3166 YKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV----GHDYQWIGLNDKMFEHD 3221
Query: 195 WKNTDGELIKFKPWHQVEPNG--GRGENCIHGLFYPNGIWNDVSC 323
++ TDG ++++ W +P+ GE+C+ +++ NG WNDV C
Sbjct: 3222 FRWTDGSTLQYENWRPNQPDSFFSTGEDCVVIIWHENGQWNDVPC 3266
>sp|Q28008|CLC3A_BOVIN C-type lectin domain family 3 member A precursor (C-type lectin
superfamily member 1) (Cartilage-derived C-type lectin)
Length = 197
Score = 55.5 bits (132), Expect = 4e-08
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 144 GLGSYWINGNDIGYESDWKNTDGELIKFKPWHQVEPNGGRGENCIHGLFYPNGIWNDVSC 323
G+ +W+ ND+ E + + +G I F W Q +PNGG+ ENC G W+D +C
Sbjct: 124 GVNDFWLGINDMVAEGKFVDINGLAISFLNWDQAQPNGGKRENCALFSQSAQGKWSDEAC 183
Query: 324 ASTQAVICQ 350
S++ IC+
Sbjct: 184 HSSKRYICE 192
>sp||Q9ERB4_2 [Segment 2 of 2] Versican core protein precursor (Large fibroblast
proteoglycan) (Chondroitin sulfate proteoglycan core
protein 2) (PG-M) (Glial hyaluronate-binding protein)
(GHAP)
Length = 2390
Score = 55.5 bits (132), Expect = 4e-08
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Frame = +3
Query: 15 YQFTKDRMNHDDAVKYCRAKNMKLPTIDNDATNKVVYDIAVKHGLGSYWINGNDIGYESD 194
Y++ R D A + CR + L +I + V + G WI ND +E D
Sbjct: 2175 YKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRV----GHDYQWIGLNDKMFEHD 2230
Query: 195 WKNTDGELIKFKPWHQVEPNG--GRGENCIHGLFYPNGIWNDVSC 323
++ TDG ++++ W +P+ GE+C+ +++ NG WNDV C
Sbjct: 2231 FRWTDGSALQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPC 2275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,348,027
Number of Sequences: 369166
Number of extensions: 972916
Number of successful extensions: 2964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)