Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N13
(267 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36166|PXL1_YEAST Paxillin-like protein 1 29 3.0
sp|Q58471|YA71_METJA Hypothetical protein MJ1071 29 3.9
sp|Q9K1B0|NUOL_NEIMB NADH-quinone oxidoreductase chain L (N... 28 6.7
sp|P54708|AT12A_RAT Potassium-transporting ATPase alpha cha... 28 8.7
sp|Q9JX92|NUOL_NEIMA NADH-quinone oxidoreductase chain L (N... 28 8.7
sp|Q9TV52|AT12A_RABIT Potassium-transporting ATPase alpha c... 28 8.7
>sp|P36166|PXL1_YEAST Paxillin-like protein 1
Length = 706
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 5 FNCINCETFFNRNIPFVNNVWCTGNPCYCYKIEYPDNAVGCFSCA 139
F CI C FN+++P + G+ YC K + +N C C+
Sbjct: 585 FKCIECGIKFNKHVP----CYILGDEPYCQKHYHEENHSICKVCS 625
>sp|Q58471|YA71_METJA Hypothetical protein MJ1071
Length = 313
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 173 KVAQRHINPFQERMKNSRQHYLDIQFCNNNKDCQY 69
K + I F ++++N +Y +++F N N +CQY
Sbjct: 180 KKLAKKITLFNKKLENYEINYFNLKFNNKNFECQY 214
>sp|Q9K1B0|NUOL_NEIMB NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 674
Score = 28.1 bits (61), Expect = 6.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 75 AILVIVTKLNIQIMLSAVFHALLKWV-YVPLSHLSQ**TKIYHLIFYLIFNMYY*HAYKI 251
A+ ++ L+ ++ A+ L W+ YV L HL + + I+ L N YY A
Sbjct: 541 ALAMVSHSLHSPVLYLAIAGVLSAWLLYVKLPHLPAKIAQTFRPIYVLFENKYYLDALYF 600
Query: 252 NYF 260
N F
Sbjct: 601 NVF 603
>sp|P54708|AT12A_RAT Potassium-transporting ATPase alpha chain 2 (Proton pump)
(Non-gastric H(+)/K(+) ATPase alpha subunit)
Length = 1036
Score = 27.7 bits (60), Expect = 8.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 33 SIAISRLLITFGVLAILVI-VTKLNIQIMLSAVFHALLKWVY 155
S I L++++G+ ++ + T L +Q AV HA+L WVY
Sbjct: 973 SQVIVALILSYGLGSVPALSFTMLRVQYWFVAVPHAILIWVY 1014
>sp|Q9JX92|NUOL_NEIMA NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 674
Score = 27.7 bits (60), Expect = 8.7
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 75 AILVIVTKLNIQIMLSAVFHALLKWV-YVPLSHLSQ**TKIYHLIFYLIFNMYY*HAYKI 251
A+ ++ L+ ++ A+ L W+ YV L HL + + ++ L N YY A
Sbjct: 541 ALAMVSHSLHSPVLYLAIAGVLSAWLLYVKLPHLPAKIAQAFRPVYVLFENKYYLDALYF 600
Query: 252 NYF 260
N F
Sbjct: 601 NVF 603
>sp|Q9TV52|AT12A_RABIT Potassium-transporting ATPase alpha chain 2 (Proton pump)
(Non-gastric H(+)/K(+) ATPase alpha subunit) (HK alpha 2)
Length = 1094
Score = 27.7 bits (60), Expect = 8.7
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 42 ISRLLITFGVLAILVI-VTKLNIQIMLSAVFHALLKWVY 155
I LL+++G+ +I + T L Q AV HA+L WVY
Sbjct: 1034 IVALLLSYGLGSITALNFTMLKAQYWFVAVPHAILIWVY 1072
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,783,913
Number of Sequences: 369166
Number of extensions: 551360
Number of successful extensions: 1255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)