Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_N09
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1) 33 0.15
sp|P91685|MGR_DROME Metabotropic glutamate receptor precursor 32 0.45
sp|P24585|DEG1_CAEEL Degenerin deg-1 (Degeneration of certa... 30 1.3
sp|Q9BV79|MECR_HUMAN Trans-2-enoyl-CoA reductase, mitochond... 28 6.5
sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1 28 6.5
sp|Q9GKR0|VEGFA_HORSE Vascular endothelial growth factor A ... 28 6.5
sp|P18016|REP_CLOPE Replication protein (ORF5) 28 8.5
>sp|Q39511|MT1_CASGL Metallothionein-like protein 1 (MT-1)
Length = 71
Score = 33.5 bits (75), Expect = 0.15
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +1
Query: 43 CGGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHP--SRLPV----GFMQDSACNC 192
CG GCN ++ + GL + T TI ++ + + S HP S + V G S+CNC
Sbjct: 12 CGSGCNCKNPVLGLSEKTTSKTIVADVAPVKS-HPEGSEMSVEGGHGCKCGSSCNC 66
>sp|P91685|MGR_DROME Metabotropic glutamate receptor precursor
Length = 976
Score = 32.0 bits (71), Expect = 0.45
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 46 GGGCNARSSIRGLEQITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACNCCSPDQYAINRP 225
G C + RG++++ L ++N P+ LP + + CS D YA+N+
Sbjct: 59 GAPCGPKVYNRGVQRLEAMLYAIDR----VNNDPNILPGITIGVHILDTCSRDTYALNQS 114
Query: 226 YRYTCTNLNNGNTVSGY 276
++ +LNN +T SGY
Sbjct: 115 LQFVRASLNNLDT-SGY 130
>sp|P24585|DEG1_CAEEL Degenerin deg-1 (Degeneration of certain neurons protein 1)
Length = 778
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 142 HPSRLPVGFMQDSACNCCSPDQYAINRPYRY---------TCTNLNNGNTVSGYMMDIRI 294
H S G + D C+C P ++ + YR+ TC N G+ + + ++
Sbjct: 574 HRSCFQNGLIDD--CSCGDP-RFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKM 630
Query: 295 TKCACKNTCE 324
KC CK +CE
Sbjct: 631 DKCVCKQSCE 640
>sp|Q9BV79|MECR_HUMAN Trans-2-enoyl-CoA reductase, mitochondrial precursor (HsNrbf-1)
(NRBF-1)
Length = 373
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 297 GDSNVHHVPADGV--AVIQVGASISVRTVNCV 208
GDS + + GV AVIQ+ A++ +RT+N V
Sbjct: 184 GDSVIQNASNSGVGQAVIQIAAALGLRTINVV 215
>sp|Q8BG26|RUSC1_MOUSE RUN and SH3 domain containing protein 1
Length = 893
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 91 ITNPLTIFSEYSKLLSNHPSRLPVGFMQDSACNCCSP 201
+ PL++ + + LL H LPVG Q A +C P
Sbjct: 643 LLQPLSVLTFHLDLLFEHHHHLPVGLQQAPAPSCPPP 679
>sp|Q9GKR0|VEGFA_HORSE Vascular endothelial growth factor A precursor (VEGF-A) (Vascular
permeability factor) (VPF)
Length = 190
Score = 28.1 bits (61), Expect = 6.5
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +1
Query: 43 CGGGCNARSSIRGLEQI-TNPLTIFSEYSKLLSNHPSRL-PVGFMQDSACNCCSPDQYAI 216
CGG CN GLE + T I + ++ + + + F+Q S C C A
Sbjct: 82 CGGCCNDE----GLECVPTAEFNITMQIMRIKPHQSQHIGEMSFLQHSKCECRPKKDKAR 137
Query: 217 NRPYRYTCTNLNNGNTVSGYMMDIRITKCACKNT 318
C+ ++ D + KC+CKNT
Sbjct: 138 QENPCGPCSERRKHL----FVQDPQTCKCSCKNT 167
>sp|P18016|REP_CLOPE Replication protein (ORF5)
Length = 406
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 272 PLTVLPLFRLVQVYLYGRLIAY*SGEQQLQAESCMNPTGN 153
P LPL++ VQ YLY +L + + Q L A + G+
Sbjct: 129 PSKALPLWKAVQEYLYNQLKYFGADRQALDATRILRVPGS 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,468,455
Number of Sequences: 369166
Number of extensions: 862552
Number of successful extensions: 2006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)